NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029323

3300029323: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-3_Run5



Overview

Basic Information
IMG/M Taxon OID3300029323 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133112 | Gp0282472 | Ga0243332
Sample NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-3_Run5
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size121769242
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060985Metagenome / Metatranscriptome132N
F078004Metagenome117N
F089054Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243332_100193Not Available77742Open in IMG/M
Ga0243332_102005All Organisms → cellular organisms → Bacteria8616Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243332_100193Ga0243332_10019391F060985MIKVEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITHLWFSSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPTYKKYIPYRIRILKLALKALERIKEEYGKD
Ga0243332_102005Ga0243332_1020051F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0243332_112312Ga0243332_1123121F078004LSSRNTDFLFRDLLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
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