| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029316 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133095 | Gp0281884 | Ga0242768 |
| Sample Name | Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 194053279 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F059106 | Metagenome | 134 | N |
| F062845 | Metagenome | 130 | N |
| F067720 | Metagenome | 125 | Y |
| F078693 | Metagenome | 116 | N |
| F081453 | Metagenome | 114 | N |
| F090515 | Metagenome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0242768_100142 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques | 107144 | Open in IMG/M |
| Ga0242768_100175 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 98818 | Open in IMG/M |
| Ga0242768_100410 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 59615 | Open in IMG/M |
| Ga0242768_101176 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 27790 | Open in IMG/M |
| Ga0242768_101333 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 24758 | Open in IMG/M |
| Ga0242768_102289 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 14194 | Open in IMG/M |
| Ga0242768_104384 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 6522 | Open in IMG/M |
| Ga0242768_138037 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:43 | 652 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0242768_100142 | Ga0242768_100142101 | F059106 | MHASVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV |
| Ga0242768_100175 | Ga0242768_1001751 | F081453 | KEMSPFFLWIGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ |
| Ga0242768_100410 | Ga0242768_100410102 | F067720 | MSSTAYEHFVGANKMYAIQRRFRDFTKTFCDFVKVNKIDHLGNVTVMVRNAGQLPQPFWLGSACGGGSCGAARCAARA |
| Ga0242768_101176 | Ga0242768_10117614 | F062845 | VTHITTRWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACA |
| Ga0242768_101333 | Ga0242768_10133324 | F090515 | VITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS |
| Ga0242768_102289 | Ga0242768_1022892 | F078693 | MVLAPVRGAERSFVKADCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC |
| Ga0242768_104384 | Ga0242768_1043843 | F067720 | MASTTYRHIGDLTDMFAVQEQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGVACGGGSRSAARCAART |
| Ga0242768_138037 | Ga0242768_1380372 | F059106 | IRVILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |