Sample 3300029219

Overview

Basic Information
IMG/M Taxon OID	3300029219 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0192974 \| Ga0168709
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011712-136
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	133008612
Sequencing Scaffolds	13
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F056682	Metagenome	137	Y
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F081354	Metagenome	114	Y
F090484	Metagenome	108	N
F090513	Metagenome	108	N
F090514	Metagenome	108	N
F090515	Metagenome	108	N
F092228	Metagenome	107	N
F099406	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F029444

Metagenome

188

F039198

Metagenome

164

F044554

Metagenome

154

F047126

Metagenome

150

F056309

Metagenome

137

F056682

Metagenome

137

F074899

Metagenome / Metatranscriptome

119

F074964

Metagenome

119

F081354

Metagenome

114

F090484

Metagenome

108

F090513

Metagenome

108

F090514

Metagenome

108

F090515

Metagenome

108

F092228

Metagenome

107

F099406

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168709_100040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	154128	Open in IMG/M
Ga0168709_100108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	86972	Open in IMG/M
Ga0168709_100262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	39784	Open in IMG/M
Ga0168709_100602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	20127	Open in IMG/M
Ga0168709_100852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	15799	Open in IMG/M
Ga0168709_101193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12613	Open in IMG/M
Ga0168709_101966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9125	Open in IMG/M
Ga0168709_106623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3313	Open in IMG/M
Ga0168709_112487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1869	Open in IMG/M
Ga0168709_118376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1301	Open in IMG/M
Ga0168709_121458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1122	Open in IMG/M
Ga0168709_122749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1061	Open in IMG/M
Ga0168709_140617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	597	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168709_100040

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

154128

Open in IMG/M

Ga0168709_100108

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

86972

Open in IMG/M

Ga0168709_100262

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

39784

Open in IMG/M

Ga0168709_100602

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

20127

Open in IMG/M

Ga0168709_100852

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

15799

Open in IMG/M

Ga0168709_101193

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

12613

Open in IMG/M

Ga0168709_101966

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

9125

Open in IMG/M

Ga0168709_106623

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3313

Open in IMG/M

Ga0168709_112487

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1869

Open in IMG/M

Ga0168709_118376

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5

1301

Open in IMG/M

Ga0168709_121458

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1122

Open in IMG/M

Ga0168709_122749

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium

1061

Open in IMG/M

Ga0168709_140617

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

597

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168709_100040	Ga0168709_100040130	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0168709_100040	Ga0168709_100040149	F090484	LTFIIYFYICCALQVKELLEINYDKKNITCLIIICSYILQICNGVLGFSERKKDMNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSRSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNHNTTVGNDKELDGESVFKDIPLEELSFYNDTYLHPSSQYSSL
Ga0168709_100040	Ga0168709_100040176	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGSDLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0168709_100108	Ga0168709_1001082	F092228	MKKKCTLVLISVLTVACIASAYLLFFYNPSFNVVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNEIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIILKTVESPYNGIWKLKVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0168709_100262	Ga0168709_1002621	F056309	SLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0168709_100602	Ga0168709_10060216	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSFLESPCILCSLLRCFHILSKKLQKTC
Ga0168709_100852	Ga0168709_1008525	F090513	MLKIFAMAKCVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0168709_101193	Ga0168709_10119316	F074899	MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSTEKP
Ga0168709_101966	Ga0168709_1019665	F090515	LQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0168709_106623	Ga0168709_1066234	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGANWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0168709_112487	Ga0168709_1124872	F044554	ASPCIFFHTQAYVLAGRFIPVSCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168709_118376	Ga0168709_1183763	F056682	MKMQSRAGKVANQPIGQCETYCASFGVLPSKNRSTLSIQELRKNRENQEVL
Ga0168709_121458	Ga0168709_1214582	F039198	MKLTIAEIQGTKYVQIYLTEEELQKKETNDLIKKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC
Ga0168709_122749	Ga0168709_1227492	F081354	LVRQNQQSSVHNFVKDFSPIFLKTSRSPLKKGAGCKNPLENGKAEVQILFDPLQATISSMELPKNFENKKLPNTLK
Ga0168709_140617	Ga0168709_1406172	F029444	MEVSEQLTGFELEDLMSWTVSNLQCPFKEDFSLQKSGIIAEKGAQTFGRRFVGFDRPKKAAPFFNF

Scaffold ID

Protein ID

Family

Sequence

Ga0168709_100040

Ga0168709_100040130

F099406

MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA

Ga0168709_100040

Ga0168709_100040149

F090484

LTFIIYFYICCALQVKELLEINYDKKNITCLIIICSYILQICNGVLGFSERKKDMNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSRSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNHNTTVGNDKELDGESVFKDIPLEELSFYNDTYLHPSSQYSSL

Ga0168709_100040

Ga0168709_100040176

F074964

MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGSDLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ

Ga0168709_100108

Ga0168709_1001082

F092228

MKKKCTLVLISVLTVACIASAYLLFFYNPSFNVVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNEIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIILKTVESPYNGIWKLKVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS

Ga0168709_100262

Ga0168709_1002621

F056309

SLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD

Ga0168709_100602

Ga0168709_10060216

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSFLESPCILCSLLRCFHILSKKLQKTC

Ga0168709_100852

Ga0168709_1008525

F090513

MLKIFAMAKCVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT

Ga0168709_101193

Ga0168709_10119316

F074899

MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSTEKP

Ga0168709_101966

Ga0168709_1019665

F090515

LQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS

Ga0168709_106623

Ga0168709_1066234

F090514

MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGANWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG

Ga0168709_112487

Ga0168709_1124872

F044554

ASPCIFFHTQAYVLAGRFIPVSCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL

Ga0168709_118376

Ga0168709_1183763

F056682

MKMQSRAGKVANQPIGQCETYCASFGVLPSKNRSTLSIQELRKNRENQEVL

Ga0168709_121458

Ga0168709_1214582

F039198

MKLTIAEIQGTKYVQIYLTEEELQKKETNDLIKKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC

Ga0168709_122749

Ga0168709_1227492

F081354

LVRQNQQSSVHNFVKDFSPIFLKTSRSPLKKGAGCKNPLENGKAEVQILFDPLQATISSMELPKNFENKKLPNTLK

Ga0168709_140617

Ga0168709_1406172

F029444

MEVSEQLTGFELEDLMSWTVSNLQCPFKEDFSLQKSGIIAEKGAQTFGRRFVGFDRPKKAAPFFNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029219: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011712-136

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences