NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029196

3300029196: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021317-140



Overview

Basic Information
IMG/M Taxon OID3300029196 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0193158 | Ga0167505
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021317-140
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size104870283
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F032312Metagenome / Metatranscriptome180N
F064817Metagenome128N
F067720Metagenome125Y
F067845Metagenome125N
F078822Metagenome116N
F080163Metagenome115N
F087335Metagenome110N
F088914Metagenome109N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0167505_102483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis7045Open in IMG/M
Ga0167505_102754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6335Open in IMG/M
Ga0167505_102924All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5906Open in IMG/M
Ga0167505_104158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4164Open in IMG/M
Ga0167505_104399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3943Open in IMG/M
Ga0167505_105352All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii3205Open in IMG/M
Ga0167505_107075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2355Open in IMG/M
Ga0167505_107209All Organisms → cellular organisms → Bacteria2305Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0167505_102483Ga0167505_1024838F088914VGRILPVCSGFFVFWSRKEGANYQISVKPFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIRNPGEFIVFSAWYAAKALEMDVK
Ga0167505_102754Ga0167505_1027547F078822FDIFLSFPNAFSKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0167505_102924Ga0167505_1029244F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0167505_104158Ga0167505_1041584F026489NQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0167505_104399Ga0167505_1043996F067720MTSTTYHHIGDVTGMFAAQEQFRHVTKMVCGRFCDLTKTYHLGAVTVMVRNAGQLPQPFWLGAACGGGSHSLSASVARA
Ga0167505_105352Ga0167505_1053522F105375MKNNETFQTTQPLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0167505_105352Ga0167505_1053524F064817MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYLRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167505_107075Ga0167505_1070753F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLNRCVTEETVEEVYQRVSNYDFDEPCAGKVPS
Ga0167505_107209Ga0167505_1072092F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0167505_107209Ga0167505_1072095F080163MKTIKFLQKSFETKERFQQEISFKYSYNRNTVESIDFRINQRNIKYFYEAMENFENSLVDEFKEKKNNLCNAKQFLESINDFDKIILVIITYMKTYFDSCKDYSKISLHIHLVQFDFTTSVLIQGFYNSSYRDLSFSTKLENKVLNSEIELLQEKLNLIKEEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL
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