Sample 3300029178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300029178

3300029178: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021316-136

Overview

Basic Information
IMG/M Taxon OID	3300029178 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193157 \| Ga0167504
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021316-136
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	43482257
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0167504_111144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	666	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167504_111144	Ga0167504_1111442	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.