Sample 3300029133

Overview

Basic Information
IMG/M Taxon OID	3300029133 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193052 \| Ga0168787
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019845-88
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	207113454
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F056309	Metagenome	137	N
F057001	Metagenome	137	Y
F059106	Metagenome	134	N
F064725	Metagenome	128	N
F066905	Metagenome	126	Y
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F068941	Metagenome	124	N
F071325	Metagenome	122	N
F075481	Metagenome	119	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N
F089005	Metagenome	109	N
F089591	Metagenome	109	N
F090515	Metagenome	108	N
F097493	Metagenome	104	Y
F106193	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F029444

Metagenome

188

F047125

Metagenome / Metatranscriptome

150

F056309

Metagenome

137

F057001

Metagenome

137

F059106

Metagenome

134

F064725

Metagenome

128

F066905

Metagenome

126

F067720

Metagenome

125

F067845

Metagenome

125

F068941

Metagenome

124

F071325

Metagenome

122

F075481

Metagenome

119

F076064

Metagenome

118

F078693

Metagenome

116

F089005

Metagenome

109

F089591

Metagenome

109

F090515

Metagenome

108

F097493

Metagenome

104

F106193

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168787_100371	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56190	Open in IMG/M
Ga0168787_100704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	31350	Open in IMG/M
Ga0168787_101546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	15563	Open in IMG/M
Ga0168787_102030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	12327	Open in IMG/M
Ga0168787_102239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11316	Open in IMG/M
Ga0168787_103930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	7079	Open in IMG/M
Ga0168787_105083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5694	Open in IMG/M
Ga0168787_105378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5458	Open in IMG/M
Ga0168787_105515	All Organisms → cellular organisms → Bacteria	5366	Open in IMG/M
Ga0168787_106218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4892	Open in IMG/M
Ga0168787_106858	Not Available	4524	Open in IMG/M
Ga0168787_110660	Not Available	3119	Open in IMG/M
Ga0168787_113381	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2572	Open in IMG/M
Ga0168787_117016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	2069	Open in IMG/M
Ga0168787_120769	Not Available	1706	Open in IMG/M
Ga0168787_121770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1628	Open in IMG/M
Ga0168787_133547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1043	Open in IMG/M
Ga0168787_141403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	830	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168787_100371

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

56190

Open in IMG/M

Ga0168787_100704

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

31350

Open in IMG/M

Ga0168787_101546

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

15563

Open in IMG/M

Ga0168787_102030

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii

12327

Open in IMG/M

Ga0168787_102239

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

11316

Open in IMG/M

Ga0168787_103930

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

7079

Open in IMG/M

Ga0168787_105083

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

5694

Open in IMG/M

Ga0168787_105378

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5458

Open in IMG/M

Ga0168787_105515

All Organisms → cellular organisms → Bacteria

5366

Open in IMG/M

Ga0168787_106218

All Organisms → cellular organisms → Bacteria → Terrabacteria group

4892

Open in IMG/M

Ga0168787_106858

Not Available

4524

Open in IMG/M

Ga0168787_110660

Not Available

3119

Open in IMG/M

Ga0168787_113381

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

2572

Open in IMG/M

Ga0168787_117016

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.

2069

Open in IMG/M

Ga0168787_120769

Not Available

1706

Open in IMG/M

Ga0168787_121770

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1628

Open in IMG/M

Ga0168787_133547

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

1043

Open in IMG/M

Ga0168787_141403

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

830

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168787_100371	Ga0168787_10037110	F067720	MSSTTYEHFVDTNKVFAAQEQFRNITKMVCVCFRGFTKTCHLGNAPVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0168787_100704	Ga0168787_1007041	F059106	MHASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0168787_101546	Ga0168787_10154616	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE
Ga0168787_102030	Ga0168787_1020308	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRLNETRRHPMPVLKLY
Ga0168787_102239	Ga0168787_10223910	F090515	VTTCCKAGQKAALQGTAPRRVACLEFAGGEKRKTNTAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0168787_103930	Ga0168787_1039301	F056309	STVKGTKRTCLRRTPSLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD
Ga0168787_105083	Ga0168787_1050837	F071325	IISKVVLFVKHFFDIFLSLPNAFLKAFHPHALRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168787_105378	Ga0168787_1053787	F029444	MGVSEQLTGFEPEDLMSWTVSNLQRPXXXXXXXXXXXXXXXAEKESQIFGRRFVGFDGAKKAAPFFDF
Ga0168787_105515	Ga0168787_1055153	F106193	VGCNTCKEKALKAERERIERSMMNRVSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
Ga0168787_106218	Ga0168787_1062184	F078693	MERFFIKANCSLLLAKENQKTTSDFDALDPRERGCSPLSDPEGEVEAQKC
Ga0168787_106858	Ga0168787_1068582	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLMQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI
Ga0168787_110660	Ga0168787_1106603	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTIAGIEDIDKKTDIEHKDVDDKKESRWPIAVTSISVLLILLVLIYLLKKMKVL
Ga0168787_113381	Ga0168787_1133812	F057001	MPIQVPRARANLMTSKDLNKVQNEIKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKDILPRVDETFCAYKEIERIYLDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER
Ga0168787_117016	Ga0168787_1170162	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTSEQLSQIQAKTFDSMSDMKQYVQSIMNGELTQDEINAMLMLQIAELKAGVDGE
Ga0168787_120769	Ga0168787_1207693	F066905	MQEEVRACGCDGNNNNCCGGGFLSNLFGGNGCGCGDNSLLFFILIFLLLFNNCGCCNR
Ga0168787_121770	Ga0168787_1217702	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0168787_126501	Ga0168787_1265012	F089591	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0168787_133547	Ga0168787_1335472	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0168787_141403	Ga0168787_1414031	F047125	RTDHMDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS

Scaffold ID

Protein ID

Family

Sequence

Ga0168787_100371

Ga0168787_10037110

F067720

MSSTTYEHFVDTNKVFAAQEQFRNITKMVCVCFRGFTKTCHLGNAPVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA

Ga0168787_100704

Ga0168787_1007041

F059106

MHASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV

Ga0168787_101546

Ga0168787_10154616

F089005

LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE

Ga0168787_102030

Ga0168787_1020308

F076064

LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRLNETRRHPMPVLKLY

Ga0168787_102239

Ga0168787_10223910

F090515

VTTCCKAGQKAALQGTAPRRVACLEFAGGEKRKTNTAADYAVKVSAFTALLCRHIGSIRTFLKS

Ga0168787_103930

Ga0168787_1039301

F056309

STVKGTKRTCLRRTPSLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD

Ga0168787_105083

Ga0168787_1050837

F071325

IISKVVLFVKHFFDIFLSLPNAFLKAFHPHALRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0168787_105378

Ga0168787_1053787

F029444

MGVSEQLTGFEPEDLMSWTVSNLQRPXXXXXXXXXXXXXXXAEKESQIFGRRFVGFDGAKKAAPFFDF

Ga0168787_105515

Ga0168787_1055153

F106193

VGCNTCKEKALKAERERIERSMMNRVSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP

Ga0168787_106218

Ga0168787_1062184

F078693

MERFFIKANCSLLLAKENQKTTSDFDALDPRERGCSPLSDPEGEVEAQKC

Ga0168787_106858

Ga0168787_1068582

F064725

VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLMQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI

Ga0168787_110660

Ga0168787_1106603

F075481

MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTIAGIEDIDKKTDIEHKDVDDKKESRWPIAVTSISVLLILLVLIYLLKKMKVL

Ga0168787_113381

Ga0168787_1133812

F057001

MPIQVPRARANLMTSKDLNKVQNEIKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKDILPRVDETFCAYKEIERIYLDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER

Ga0168787_117016

Ga0168787_1170162

F097493

MYKFYSKNGTAQFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTSEQLSQIQAKTFDSMSDMKQYVQSIMNGELTQDEINAMLMLQIAELKAGVDGE

Ga0168787_120769

Ga0168787_1207693

F066905

MQEEVRACGCDGNNNNCCGGGFLSNLFGGNGCGCGDNSLLFFILIFLLLFNNCGCCNR

Ga0168787_121770

Ga0168787_1217702

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR

Ga0168787_126501

Ga0168787_1265012

F089591

MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK

Ga0168787_133547

Ga0168787_1335472

F068941

MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG

Ga0168787_141403

Ga0168787_1414031

F047125

RTDHMDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029133: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019845-88

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences