NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029101

3300029101: Human fecal microbial communities from mother in Denmark - 157_M



Overview

Basic Information
IMG/M Taxon OID3300029101 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193521 | Ga0169212
Sample NameHuman fecal microbial communities from mother in Denmark - 157_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size150114687
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.676097Long. (o)12.568337Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F042936Metagenome157N
F047126Metagenome150N
F052660Metagenome142N
F055715Metagenome138N
F067845Metagenome125N
F087335Metagenome110N
F087336Metagenome110N
F089005Metagenome109N
F092228Metagenome107N
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169212_100236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales75518Open in IMG/M
Ga0169212_100394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii51526Open in IMG/M
Ga0169212_101028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales23664Open in IMG/M
Ga0169212_101266All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii19314Open in IMG/M
Ga0169212_101839All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae13071Open in IMG/M
Ga0169212_101841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes13060Open in IMG/M
Ga0169212_102212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10682Open in IMG/M
Ga0169212_103475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae6389Open in IMG/M
Ga0169212_106287All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3501Open in IMG/M
Ga0169212_107646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2898Open in IMG/M
Ga0169212_121741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1000Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169212_100236Ga0169212_10023673F055715LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTSEKFCDKINELIRVGTAEILDN
Ga0169212_100394Ga0169212_10039431F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0169212_101028Ga0169212_10102811F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAADHSRSADALPGKSNS
Ga0169212_101266Ga0169212_10126619F089005LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKDYSEMYTKKHQELRI
Ga0169212_101839Ga0169212_1018394F087336MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0169212_101841Ga0169212_1018416F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTDETVGEVYQRVSNYDFDEPCAGSMPS
Ga0169212_102212Ga0169212_1022122F042936VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKLYFRSRLRGKG
Ga0169212_103475Ga0169212_1034754F047126VYLKTKKMTNISQTQAGFKPKSLGILCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169212_106287Ga0169212_1062873F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0169212_107646Ga0169212_1076464F032286MRSMVKWVCQIVTPVRHRALIFDTRLFDGNAADDTLVTGNTFRFCRLMCPCVKRRNIMLNDKRHSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSQRFVLLGALDAALRQRTYPVRTVMQFSRFRCDYRTILAKNIALSRISKGSENAPKNADFHAYGQDRKRAE
Ga0169212_121741Ga0169212_1217412F097493MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE
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