NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029057

3300029057: Human fecal microbial communities from mother in Denmark - 383_M



Overview

Basic Information
IMG/M Taxon OID3300029057 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193676 | Ga0169682
Sample NameHuman fecal microbial communities from mother in Denmark - 383_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size150610821
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsf321
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F042936Metagenome157N
F048702Metagenome / Metatranscriptome147Y
F055715Metagenome138N
F071325Metagenome122N
F072949Metagenome / Metatranscriptome120Y
F076190Metagenome118Y
F078693Metagenome116N
F087336Metagenome110N
F088914Metagenome109N
F088921Metagenome109N
F097172Metagenome / Metatranscriptome104Y
F099451Metagenome103N
F101355Metagenome102N
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169682_100616All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides25686Open in IMG/M
Ga0169682_101268All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales14559Open in IMG/M
Ga0169682_101610All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes11979Open in IMG/M
Ga0169682_101669All Organisms → cellular organisms → Bacteria11651Open in IMG/M
Ga0169682_103146All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae6502Open in IMG/M
Ga0169682_103183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6441Open in IMG/M
Ga0169682_105046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4199Open in IMG/M
Ga0169682_105552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3877Open in IMG/M
Ga0169682_105879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3676Open in IMG/M
Ga0169682_106422All Organisms → cellular organisms → Bacteria3398Open in IMG/M
Ga0169682_107562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2943Open in IMG/M
Ga0169682_108045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2785Open in IMG/M
Ga0169682_110060All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctsf322306Open in IMG/M
Ga0169682_111923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2016Open in IMG/M
Ga0169682_115203All Organisms → cellular organisms → Bacteria1646Open in IMG/M
Ga0169682_116109All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741570Open in IMG/M
Ga0169682_119582All Organisms → cellular organisms → Bacteria1336Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169682_100616Ga0169682_10061652F099451MDIKNVGQLRKVIENLSDDYTIEMRVRRTLSDEELRGCLYPYPYDTEYLTLEFDGIGVSDKVLCLGVTSKQQE
Ga0169682_101268Ga0169682_10126821F013656MSKIYKEPNKSETETTINVLYSENVFSIYTNKVNLQKQLNKLLGKPTKEYKIKRSIVGSSWEISLDDKIRISRLVLKANIFELYEKG
Ga0169682_101610Ga0169682_1016108F105374MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0169682_101669Ga0169682_1016695F097172MKKNVLKKLMCAVLATACVATAVVPAMADDVITAEAATKKVTSVYKYHLEGYDKKGNDLFYSKTSFYNDLNSLPAIKTGKTTINVPAVTASVKSLSKEKDNPCYRSFLKFKAPKTGKYVITCTNLQGTDTQSVKILQNIYFDKVIKNGKKYGTESISVYTIGDYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK
Ga0169682_103146Ga0169682_1031465F097172MKKTMLKKLMCAVLTAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGKPEYVTYVKFKAPKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQISRTGKKYCLTSIEDSDTVGKYDTLYENNYLARLRTILNNYKAEHPEYTDVIEETYIDYTDYVNKRPVNKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0169682_103183Ga0169682_10318311F072949MAKRKNNNVAKVLVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAIA
Ga0169682_105046Ga0169682_1050462F087336MVCFLTGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0169682_105552Ga0169682_1055521F078693MVRAPVRGAKRFYIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS
Ga0169682_105879Ga0169682_1058796F101355MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRRSYFFKSFVTEMSIFICMHKCLAQTGRLRSSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0169682_106422Ga0169682_1064222F042936MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVHFRSRLRGK
Ga0169682_107562Ga0169682_1075621F071325FRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169682_108045Ga0169682_1080452F097172MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK
Ga0169682_110060Ga0169682_1100601F048702MDKRVNKKTKEELQQYLMWRRRGSVVLAKKGKGAKYNRQKIKVKNYTWE
Ga0169682_111923Ga0169682_1119233F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENRKNPGKFIAFSAWYAAKALEIGVK
Ga0169682_115203Ga0169682_1152031F055715LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKLCDKISELI
Ga0169682_116109Ga0169682_1161092F088921LGATIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKREKYINGEIYGEKNQIIVANKSAKIRDKMRSK
Ga0169682_119582Ga0169682_1195822F076190KNVFTAASRVSGRVWSLVRITVPNGLKYVKIGVEKPQNNSLYPYFQREPL
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