NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029050

3300029050: Human fecal microbial communities from mother in Denmark - 276_M



Overview

Basic Information
IMG/M Taxon OID3300029050 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193623 | Ga0169629
Sample NameHuman fecal microbial communities from mother in Denmark - 276_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size155339999
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044554Metagenome154N
F047125Metagenome / Metatranscriptome150N
F055715Metagenome138N
F071325Metagenome122N
F076190Metagenome118Y
F087334Metagenome110N
F088914Metagenome109N
F088921Metagenome109N
F089053Metagenome109Y
F090513Metagenome108N
F090515Metagenome108N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169629_101187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales17820Open in IMG/M
Ga0169629_102329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis9215Open in IMG/M
Ga0169629_102761All Organisms → cellular organisms → Bacteria7937Open in IMG/M
Ga0169629_103907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae5803Open in IMG/M
Ga0169629_105274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4404Open in IMG/M
Ga0169629_105558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4204Open in IMG/M
Ga0169629_106019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3943Open in IMG/M
Ga0169629_107632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3200Open in IMG/M
Ga0169629_111773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2150Open in IMG/M
Ga0169629_125286All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii994Open in IMG/M
Ga0169629_137955All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales628Open in IMG/M
Ga0169629_138323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella622Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169629_101187Ga0169629_1011871F055715LTKANEFDKINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0169629_102329Ga0169629_1023295F090513MLKIFAIAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0169629_102761Ga0169629_1027615F088921LGAIIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANK
Ga0169629_103907Ga0169629_1039073F087334MASRYQFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0169629_105274Ga0169629_1052742F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0169629_105558Ga0169629_1055584F071325FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELMSCATAYL
Ga0169629_106019Ga0169629_1060192F047125MDVALLLVVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS
Ga0169629_107632Ga0169629_1076322F090515VITCYKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0169629_111773Ga0169629_1117733F044554SPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169629_125286Ga0169629_1252861F089053MILCRAKRALFAFSVKLERVVDGCRPTKGCIKKWIHGSANGQPELSTAEEVNVKNMEAFL
Ga0169629_137955Ga0169629_1379552F076190TISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKTQNNSLYPYFQREPL
Ga0169629_138323Ga0169629_1383231F099269GVLLSVQVGESLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
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