NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028964

3300028964: Human fecal microbial communities from infant at 12 months in Denmark - 45_12M



Overview

Basic Information
IMG/M Taxon OID3300028964 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193700 | Ga0169706
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 45_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size77363924
Sequencing Scaffolds3
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044555Metagenome / Metatranscriptome154N
F055775Metagenome138N
F059106Metagenome134N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F080163Metagenome115N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169706_100032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales186802Open in IMG/M
Ga0169706_100126Not Available82751Open in IMG/M
Ga0169706_100265Not Available44976Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169706_100032Ga0169706_100032177F059106VILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0169706_100126Ga0169706_10012622F060985MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLEHSGTAMGMCNIFNSQDHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRISGYWFPYYKKYIPHRIKILKLALKDLERIKEEYGKD
Ga0169706_100126Ga0169706_10012623F080163MKTIKFLQESFETKERFQQEISIKYFYNLDIVESIDFRINQRNIRYFYEAMQNFENFLVNEFKEKKTNFCSANQFLESINDFDKILFVIINYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKFESQVLDSENELLQEKLDLIREELYKIMGIDPDLQKKGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0169706_100126Ga0169706_10012627F044555MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLDKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEIDPYLQDILQNPENLVSLSQHHKR
Ga0169706_100126Ga0169706_10012629F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKGDFHNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0169706_100126Ga0169706_10012632F105375MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFTMNFTDGEANIKSINRISSNIMQITFTV
Ga0169706_100126Ga0169706_10012634F064817MNIKNLFNRFRKQEPELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITEVFTDIWYKCQGYMDTDHIGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDE
Ga0169706_100265Ga0169706_1002655F055775MAQIAQQDNLVIEVATTAAALDGGTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIALN
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