NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028760

3300028760: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028760 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321349 | Ga0307362
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size77050013
Sequencing Scaffolds10
Novel Protein Genes15
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae2
Not Available3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020914Metagenome / Metatranscriptome221N
F029768Metagenome / Metatranscriptome187N
F047076Metagenome / Metatranscriptome150N
F048337Metagenome / Metatranscriptome148N
F059033Metagenome / Metatranscriptome134N
F064746Metagenome / Metatranscriptome128N
F077342Metagenome / Metatranscriptome117N
F082739Metagenome / Metatranscriptome113N
F088355Metagenome / Metatranscriptome109Y
F097412Metagenome / Metatranscriptome104N
F105254Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307362_101157All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0035212Open in IMG/M
Ga0307362_104590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae2487Open in IMG/M
Ga0307362_110615Not Available1439Open in IMG/M
Ga0307362_116417All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1057Open in IMG/M
Ga0307362_125586Not Available751Open in IMG/M
Ga0307362_127908All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium704Open in IMG/M
Ga0307362_131838Not Available637Open in IMG/M
Ga0307362_133094All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon618Open in IMG/M
Ga0307362_137610All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.559Open in IMG/M
Ga0307362_140610All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium529Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307362_101157Ga0307362_1011572F077342MARTLNEFIVSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIDQVFDISMQYYLLYSPTYCRNAGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEEQRREILNPKRIF
Ga0307362_104590Ga0307362_10459010F088355MKNMTNKISVFIGRKGRFILAILTIALFVLAAGAPNATLGIGR
Ga0307362_104590Ga0307362_1045906F088355MKNLTNKISVFVSKKGQLVIAILTIALFVLAAGAPNATLGIGR
Ga0307362_104590Ga0307362_1045907F088355MKNLTNKISVFVGRKGQLILAILTIALFVLAAGAPNASLGIGR
Ga0307362_104590Ga0307362_1045908F088355MKNLTNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0307362_110615Ga0307362_1106152F047076MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQDAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKATKSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQV
Ga0307362_115383Ga0307362_1153831F105254LERGKKLMAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDDPTNGHPYYKDEPEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0307362_116417Ga0307362_1164173F088355MKKLTSKINLLIAILTIALFVLAAGAPNATIGIGR
Ga0307362_121756Ga0307362_1217562F020914MAIYQKYGFAIDQILSENQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESADKVEAFSVRR
Ga0307362_125586Ga0307362_1255861F059033MATTTANLQTLAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYRSSIFAVRWDEFDGASLRFNNTEL
Ga0307362_127908Ga0307362_1279082F048337MIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307362_131838Ga0307362_1318381F097412ATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307362_133094Ga0307362_1330941F082739MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVMLATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTAPFVNEAT
Ga0307362_137610Ga0307362_1376101F064746DTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDDGKVCVIDAFTTNNYGMSAWDI
Ga0307362_140610Ga0307362_1406101F029768GKAMTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLFEALETQTQMWGFKSISQTVRAILTFYFLPVAYELELKNRSISEHKEFLKEKQAEGFSLEQARANYFTFQVVEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKELEQVAE
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