NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028730

3300028730: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028730 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321350 | Ga0307363
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size96431879
Sequencing Scaffolds16
Novel Protein Genes19
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae2
Not Available3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020914Metagenome / Metatranscriptome221N
F026449Metagenome / Metatranscriptome198Y
F047076Metagenome / Metatranscriptome150N
F048337Metagenome / Metatranscriptome148N
F077342Metagenome / Metatranscriptome117N
F082739Metagenome / Metatranscriptome113N
F088355Metagenome / Metatranscriptome109Y
F092888Metagenome / Metatranscriptome107Y
F097412Metagenome / Metatranscriptome104N
F102634Metagenome / Metatranscriptome101Y
F105254Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307363_1004521All Organisms → cellular organisms → Bacteria2864Open in IMG/M
Ga0307363_1005391All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0032600Open in IMG/M
Ga0307363_1012240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1553Open in IMG/M
Ga0307363_1013992Not Available1418Open in IMG/M
Ga0307363_1014696All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1370Open in IMG/M
Ga0307363_1017096All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1232Open in IMG/M
Ga0307363_1026802All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon885Open in IMG/M
Ga0307363_1027206All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon875Open in IMG/M
Ga0307363_1027850All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium859Open in IMG/M
Ga0307363_1037247All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
Ga0307363_1039054All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae663Open in IMG/M
Ga0307363_1039653Not Available655Open in IMG/M
Ga0307363_1040125All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon649Open in IMG/M
Ga0307363_1042367Not Available622Open in IMG/M
Ga0307363_1047379All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon572Open in IMG/M
Ga0307363_1047446All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307363_1004521Ga0307363_10045217F048337MIEKQVTFEGILREDEEQSNETARLQDYQIAAITKDATYVLIDALPYDFIVTNAFYRITEAFDGTINLGTAAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKIEVHVTGFLLMPTLL
Ga0307363_1005391Ga0307363_10053912F077342MARTLNEFIVSTGNYVYEITDAEMAGVDLSDFNVAVLLHCVLSDESEKDFIVFSKGNIDQVFDINMQYFLLYSPTYCRNAGNGIFIVSIPFWRMQHVAENLDSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPRTSVVDEPAEEQRREILNPKRIF
Ga0307363_1012240Ga0307363_10122401F088355MKNLTNKINIFAGQKGQLVIAILTIALFVLAAGAPNATIGIGR
Ga0307363_1012240Ga0307363_10122403F088355MKNITNKISVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0307363_1013992Ga0307363_10139921F047076MTNGELLALAQLIIPELTAKAFVQFYNIAFEKISREVRLITTVLKPTSVSQYRDLLEQKAVKIDSVKDTSGDDIYWEVKHRKLLIYDSNRELITNETVGNHNLEIEYWESISGAIKPFPTDTVSEIDPNAIEEWNKLIPDISDVEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNS
Ga0307363_1014696Ga0307363_10146962F048337MARKENNKMIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307363_1014820Ga0307363_10148202F020914MAIYQKYGFAIDQILSENQALPNATSEDSTNTIKLDAVADDGLHIVVCAASTIVQLTSAATLEIRPTIGATDGAVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTS
Ga0307363_1017096Ga0307363_10170961F097412MNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307363_1026802Ga0307363_10268022F092888MPGPASARGNYGMQPRNNKTIPTTSEGSQVHEQGKLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSIILIQAMATGQTAWNHAAFEPASSLVLAVVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDATNYEAGMLPGHVSALY
Ga0307363_1027206Ga0307363_10272061F082739TNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTNPFVNEATVNGEPANATVEFV
Ga0307363_1027850Ga0307363_10278503F048337MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTDAAPGRIIADADFVKTVGKRSVAKSIQLNAGKPIQLVLGPGTTGKIEVHVTGFLLM
Ga0307363_1037247Ga0307363_10372471F097412PNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPSKGA
Ga0307363_1039054Ga0307363_10390543F088355MKSTINKIGVFASKKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0307363_1039653Ga0307363_10396531F047076MKNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQNAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKATKSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNS
Ga0307363_1040125Ga0307363_10401251F082739TNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVNFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTATTFTVTDAFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPDSNTFVNEATVNGETANATIEFV
Ga0307363_1042367Ga0307363_10423672F026449VSYSISKSMMISRRQGGGNEAYYTYVEEADDAANKDSA
Ga0307363_1047379Ga0307363_10473791F082739MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFAPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVMLATVDNDANTVSLEIALDEPLATD
Ga0307363_1047446Ga0307363_10474461F102634QQQEAQVMETTIKKRIEIEGYGMVDGEFIQSDQGWFCREVNGVRWDFREWGAQAPMETPEEAAV
Ga0307363_1053420Ga0307363_10534201F105254ATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKVPPTGEVYYSYRVTDCIGITGDFNQVRDIYIHCDGNFASEWGLDAGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQAGGTPGTTGHSIDDSSNGHPYYKDETEKVRNFDTCLANSPLLIDSGPYTDDFYSKAWVLS
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