NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028481

3300028481: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C4



Overview

Basic Information
IMG/M Taxon OID3300028481 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116274 | Gp0272169 | Ga0233366
Sample NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C4
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size252128370
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.3
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral4
Not Available5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039427Metagenome / Metatranscriptome163Y
F041521Metagenome159Y
F042680Metagenome / Metatranscriptome157Y
F051611Metagenome143Y
F057003Metagenome / Metatranscriptome137Y
F058575Metagenome / Metatranscriptome134Y
F063246Metagenome / Metatranscriptome129Y
F066313Metagenome126Y
F072921Metagenome / Metatranscriptome120Y
F082887Metagenome / Metatranscriptome113Y
F104183Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233366_1000108All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.37008Open in IMG/M
Ga0233366_1003346All Organisms → cellular organisms → Bacteria4855Open in IMG/M
Ga0233366_1003434All Organisms → Viruses → Predicted Viral4778Open in IMG/M
Ga0233366_1005119All Organisms → Viruses → Predicted Viral3928Open in IMG/M
Ga0233366_1010109All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.2765Open in IMG/M
Ga0233366_1018608All Organisms → Viruses → Predicted Viral1940Open in IMG/M
Ga0233366_1031988All Organisms → Viruses → Predicted Viral1376Open in IMG/M
Ga0233366_1036135Not Available1271Open in IMG/M
Ga0233366_1045964All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1079Open in IMG/M
Ga0233366_1048581Not Available1039Open in IMG/M
Ga0233366_1070506Not Available798Open in IMG/M
Ga0233366_1098129Not Available631Open in IMG/M
Ga0233366_1106433All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes595Open in IMG/M
Ga0233366_1106575Not Available594Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233366_1000108Ga0233366_100010833F057003MANFINVSGITYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKMYSGEIGDAWQLYTCPFTPQGEASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGEWYFGKLRQKMSKEYQEIFWGGDTARTATTKTYLKAVDGIEKQLNDNTGVTKVSGASFTVDNAIAQVEALIMKGLEVAGDAEVDTEGYKIFMNHQDARVLEIALGKLCCDVQNNRIFGNYGRENGRIFIMGYEIVPSMISKGKMIFGPARNLVLGYDTFDSHLEYKLIDMRETTGDNMFRVLAISNIAVGIIMPELFVYSA
Ga0233366_1003346Ga0233366_10033461F041521EYRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233366_1003434Ga0233366_10034342F057003MSNFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGISFWDNVKGKMKLYSGEIGDAWQVYTCPFTPAGAASLAESFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMSKEYQEIFWGGDTARTATTKVYLKAADGVEKQLHENTGVTKVTASAFTVDNAIAQVEAIIMKGLEVANNAEVDTEGYKLFMNHNDLRVLEVALGKVCCPNSTNQVFANWGRENGRIYVMGFEIVPSMISKGKMIFGPARNLVLGYDTFDSHLEYKLINLRDTTGDNMFRVIAISNIAVGIILPELFVLAE
Ga0233366_1005119Ga0233366_10051191F039427LLIYKGMSKKTFNLVTGIIGGLQTIGVAIVTYTNPEYATAINSAIVIAGAAAIEICNLFTPSEK
Ga0233366_1010109Ga0233366_10101092F057003MANFINVSGLTYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKMYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWKGDTGYTGTSKVYLKAVDGIEKKLGAIPSDNQLTISAITVGNVVAQVESAIDKALEVAGNAEVDTEGYKIFMNHQDVRVLEVALGKLCCDVQTNRVFSNYARENGRIFIMGFEVVPTMQSKNTIIVGPARNLVLGYDTFDSHIEYKLIDMRDTTGDNMFRVLAISNIAVGIILPELFVFGKTA
Ga0233366_1018608Ga0233366_10186082F104183MKKEDFEIQAKDAAKAMNKKKAPSRPETQFIKGALWAWDILSQGHTIEEYEDILRRDVCDRFQIVHPEQWQELLISETATMMADRDGMQADIMTEGRLLEKWDKNRMPYKESNPLYVHLKELQRSIGMQREHLGLSAKSTKKMESPKRGADEKDKLLDTLSEITNV
Ga0233366_1031988Ga0233366_10319882F066313MKEKFQKWMRRNNMMFSAMAGETFTNAEVVYTHIGLVAFLIVLGLAG
Ga0233366_1036135Ga0233366_10361352F058575MINQIMGHFFEGKSASELYEAGNEYRKNRCFGEAINFYRAAAEAPDATDEIKRKSLASVELMQEINGFVNTDLMNP
Ga0233366_1045964Ga0233366_10459641F057003MANFINVENITYNGKEAQEIFSKDIYDIDLRQYGITYMDGVKGKTKLYSGEIGDAWQVYTCPFTPAGSVALAESYIEPSAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFAEWYFGKLRAKMAKEYQELFWQGDTAHTATTKTYLKAVDGVEKKLNAGVPAGNKVTLSAFTVANAVEQVEAVILKGLEVANANEVDTEGYKVFMNHADVRVLEIALGKLCCGNSINDRFANYGRENGRIFVMGYEIVPTMQSKNSVIFGPARNL
Ga0233366_1048581Ga0233366_10485812F082887MNKEKIKKIAKYTTNILGIISMLIAGINAVDGITIPYAIQIVHVIAVIQGAIGTYLLSGKALESRKEEKENVKD
Ga0233366_1070506Ga0233366_10705062F072921MTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADNGSTRLAMGRSKGKTTISLIGVISGKKVTESVEIRIRNRKESRKTKAPLSVRMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIALLVLWLGMLIASFGNKPEPKASSDQVQTAYLMR
Ga0233366_1098129Ga0233366_10981291F051611VGDQKVFTLPNYGKARSAQSYANQLKKATMGTENPMEFKAVVGDPIPGSGQCSVTITRMS
Ga0233366_1106433Ga0233366_11064332F063246MGKLKIELNDIQNIRDLLQETYRLADEQIVQSQNEINKLANATSLQEEPMESKAKYAKAINDYLGLKDKAIAKKLDIAKLLTDIYHHNGDVKGALEHGEAAKNMSFNFDDIRKIVDDSLNEQEKTKTIQLNKK
Ga0233366_1106575Ga0233366_11065753F042680MTVNDIKPLVKGIAQLQSVLAGGIAVYKIVAVDGTEYQLEIDVSNKADVGASATFNATEKALLLMRWIRKANEDDTLIKIKG
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