NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027640

3300027640: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027640 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0103000 | Gp0061308 | Ga0209347
Sample NameDeep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size588151591
Sequencing Scaffolds44
Novel Protein Genes45
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria23
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium9
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → borehole → clay soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationMt. Terri, Switzerland
CoordinatesLat. (o)47.379Long. (o)7.1648Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001519Metagenome / Metatranscriptome679Y
F001605Metagenome / Metatranscriptome664Y
F001750Metagenome / Metatranscriptome642Y
F001931Metagenome / Metatranscriptome615Y
F002064Metagenome597Y
F002279Metagenome575Y
F002324Metagenome571Y
F002338Metagenome / Metatranscriptome569Y
F002548Metagenome / Metatranscriptome549Y
F004903Metagenome / Metatranscriptome419Y
F006090Metagenome382Y
F006775Metagenome365Y
F011178Metagenome / Metatranscriptome294Y
F012395Metagenome / Metatranscriptome281Y
F013826Metagenome / Metatranscriptome268Y
F013963Metagenome / Metatranscriptome267Y
F020065Metagenome226Y
F021852Metagenome / Metatranscriptome217Y
F032404Metagenome / Metatranscriptome180Y
F034623Metagenome / Metatranscriptome174Y
F039554Metagenome163Y
F039817Metagenome163Y
F041974Metagenome / Metatranscriptome159Y
F043603Metagenome156Y
F046478Metagenome / Metatranscriptome151N
F048519Metagenome148Y
F048553Metagenome148Y
F052044Metagenome / Metatranscriptome143N
F057405Metagenome136Y
F065095Metagenome / Metatranscriptome128Y
F066113Metagenome / Metatranscriptome127Y
F067094Metagenome126Y
F068101Metagenome / Metatranscriptome125Y
F076426Metagenome118Y
F081525Metagenome114Y
F087671Metagenome110Y
F088355Metagenome / Metatranscriptome109Y
F097999Metagenome104Y
F105419Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209347_1001086All Organisms → cellular organisms → Bacteria50484Open in IMG/M
Ga0209347_1001309All Organisms → cellular organisms → Bacteria42474Open in IMG/M
Ga0209347_1001436All Organisms → cellular organisms → Bacteria38900Open in IMG/M
Ga0209347_1003097All Organisms → cellular organisms → Bacteria20238Open in IMG/M
Ga0209347_1003861All Organisms → cellular organisms → Bacteria16655Open in IMG/M
Ga0209347_1005836All Organisms → cellular organisms → Bacteria11375Open in IMG/M
Ga0209347_1005909All Organisms → cellular organisms → Bacteria11259Open in IMG/M
Ga0209347_1006131All Organisms → cellular organisms → Bacteria10910Open in IMG/M
Ga0209347_1006573All Organisms → cellular organisms → Bacteria10216Open in IMG/M
Ga0209347_1006583All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10199Open in IMG/M
Ga0209347_1007355All Organisms → cellular organisms → Bacteria9214Open in IMG/M
Ga0209347_1008511All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8074Open in IMG/M
Ga0209347_1008596All Organisms → cellular organisms → Bacteria → Proteobacteria7999Open in IMG/M
Ga0209347_1009051All Organisms → cellular organisms → Bacteria → Proteobacteria7610Open in IMG/M
Ga0209347_1009655All Organisms → cellular organisms → Bacteria7168Open in IMG/M
Ga0209347_1009676All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium7151Open in IMG/M
Ga0209347_1009980All Organisms → cellular organisms → Bacteria6937Open in IMG/M
Ga0209347_1010093All Organisms → cellular organisms → Bacteria6860Open in IMG/M
Ga0209347_1010238All Organisms → cellular organisms → Bacteria6767Open in IMG/M
Ga0209347_1010796All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Thermoanaerobaculaceae → Thermoanaerobaculum → Thermoanaerobaculum aquaticum6427Open in IMG/M
Ga0209347_1012245All Organisms → cellular organisms → Bacteria5706Open in IMG/M
Ga0209347_1012938All Organisms → cellular organisms → Bacteria → Proteobacteria5420Open in IMG/M
Ga0209347_1013543All Organisms → cellular organisms → Bacteria5190Open in IMG/M
Ga0209347_1013968All Organisms → cellular organisms → Bacteria5031Open in IMG/M
Ga0209347_1017064All Organisms → cellular organisms → Bacteria → Proteobacteria4141Open in IMG/M
Ga0209347_1018863All Organisms → cellular organisms → Bacteria3769Open in IMG/M
Ga0209347_1020147All Organisms → cellular organisms → Bacteria3529Open in IMG/M
Ga0209347_1020702All Organisms → cellular organisms → Bacteria3437Open in IMG/M
Ga0209347_1021492All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3322Open in IMG/M
Ga0209347_1022476All Organisms → cellular organisms → Bacteria3187Open in IMG/M
Ga0209347_1023228All Organisms → cellular organisms → Bacteria3084Open in IMG/M
Ga0209347_1042231All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1783Open in IMG/M
Ga0209347_1043859All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1726Open in IMG/M
Ga0209347_1044288All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1710Open in IMG/M
Ga0209347_1053080All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1459Open in IMG/M
Ga0209347_1053795All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1441Open in IMG/M
Ga0209347_1055253All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1408Open in IMG/M
Ga0209347_1066164All Organisms → cellular organisms → Bacteria1205Open in IMG/M
Ga0209347_1076875All Organisms → Viruses → Predicted Viral1061Open in IMG/M
Ga0209347_1120097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae733Open in IMG/M
Ga0209347_1122697All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium719Open in IMG/M
Ga0209347_1135220All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium664Open in IMG/M
Ga0209347_1137761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi654Open in IMG/M
Ga0209347_1173005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209347_1001086Ga0209347_10010868F002279MAAQPVTPPRPQYDWAKLVGHSLKQNGPWATWEKLVEARRAYPEDMLLRGYAEIVRNTIVRDLLAGPKGLQAAPKLTPDFLADFDRFNLTAQEGYLISLIDGRITLEMLLKLTPFDNFTTLFNMAKLEHQKAITIPS
Ga0209347_1001309Ga0209347_100130916F001750MMTKIEVEISGELSRQIERIVRDGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLTLYQRLVELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD
Ga0209347_1001436Ga0209347_10014368F001519MSLVNAVCAEISVYQGIGECTGTLVERRAVRGKAGLCKSMRDLATKSRVLGDGYYYIPVDLWPEEAGPVVINKMDWTVIGSLSRSRSERKRTRRASAGDD
Ga0209347_1003097Ga0209347_100309715F002548MPKFEYESQAETGPAFIERRRLRRVRMIVELTLNLISSDRTTSYREARSLVECARKAILELYPGFESHYELMVRPHFCRVLHERWPEDEIRYADPHEMVN
Ga0209347_1003861Ga0209347_10038618F020065VAIFAVMKKSQIQQIKEGRAMHEKTWSGRLQPFGPKVQLNGPNAVNLTTVPSSAKEKYNGGIDPKPETTGAK
Ga0209347_1005836Ga0209347_10058363F043603MNNIAQTRSTRFESILSATYLLPGMLAVNTAALMALNHLGGIPQWVKAAAALFLAF
Ga0209347_1005909Ga0209347_10059094F068101MSERFPDEHERAAAGLDFDTSALFENAAEWGTRMIENGPEALLDEIEEMLPEAWREQIQTFPIVAVALGFGVGVFLGMKKSHEVIAAGTSLVSAAAMANVNQVMDKVKEGR
Ga0209347_1006131Ga0209347_10061311F006775MQLGKDSCACGHIIDQHDGGRGGPCSFCACSAGEPPTAFQVGLIHSLHEVSVMLARLVKEVQGAKGG
Ga0209347_1006573Ga0209347_100657311F001519MTLVNSLCAEISVYQGVGETTGVLVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPVDLWPKANEPIVVHKHDWTVISSIPRTTRTSKKGAVAK
Ga0209347_1006583Ga0209347_10065838F052044MADADRLGKIASIGQDLITTQLTMATQTPSQALEGTWVLGYCIGIFDALAQRADLDDAEGFSLITLGFLGLFADPADPEAAAFIRHSLDRQDSPRFQEGATAGGTDVFDWVADRTKAPTALFEHLTR
Ga0209347_1007355Ga0209347_10073558F048519GTAPSVRGPVYRGLICEKVYDRLENFVRHPNEPTVGHAELRWHYANPTPLYELFETKINKPLDKPFATHVSFWFEKNQWKFSVNVRKAD
Ga0209347_1008511Ga0209347_10085119F041974MDSMFWGLFGLFAAFVVLLAVVAVLRRRVGGGFGPTERSDGSMTVSPTGYSEKHEGHGKTIGPTDNNAAKY
Ga0209347_1008596Ga0209347_10085965F001931MTNEALQQQRLDILSGVVSTLLSELKGGSGDKDRRRQVEEWMRTLAEKYPEFEIEAGLRDYYLAEAQRLRGEFDKSSDLTERLGLGRSIESFLDRAAEYDRRITDR
Ga0209347_1009051Ga0209347_10090514F087671MMKSCDEHKHEHRDLPCPWPDCPNSEGADDAFEVSRHTGAGKMTRAEGHFVKAPPPRKFQRAKWECEKCGAIGWTWMEEGAERRMDRCPHRKPGTVVPRR
Ga0209347_1009655Ga0209347_10096555F002279MATPIRIVANMSSTPTSPPKQDWARLVGESVKQHGVWHTYGRLLEARRVYPDDLSLRGYVEIVRNTIVRDFLGHPRGMQAVPKLSADFLSHFDRFNLNAQEGYLVSLIDGRLSIQKLIILSPFDPFTTIFILAKLQQEKAITVP
Ga0209347_1009676Ga0209347_10096762F001605MSEIPPRQALPEAQSLAQLPLKILEEVIRQLRSTRNDIIRFAVWNIRNVTDDDFNKIDDQKLLGYFRQDLLETRFLSKGRRIDLVQLWNWFDNEMSGVEPLLVDGQEVFLNIQDKDLEKVRKRIAEIDAFLPALRGDDLEAFKRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNYFVSGAGAPRADRIPLEAVVDIPEPPMPEEEHDEVEA
Ga0209347_1009980Ga0209347_10099801F021852MTAFEDRIRRMAREAIVELGRDESEIADVIEPPGADYCVVTFTDPEHKPIEIPKPLGAGESQELDEIRRALQYRFGS
Ga0209347_1010093Ga0209347_10100933F006090MSLLIERKISLPTPRLQGKEVLTGPDPAVCKVKGVMFGGRRQFLLDTLGQEGFTAFTEKLSPETRSYVRTPLASSWCEFSSLIELDRAIHDHLDADALLKMGAASAELGVGRIYRFLDSTELTQFFEKSALFHDQYQKFGKVRFEKTTDGGRMIYSDYPCYSPIFCASAIGYFMEAILRHGGTSPSVTETKCQCRGDATCTYEMKWA
Ga0209347_1010238Ga0209347_10102384F002064MSAVAAAPGTGLTGQQLGLIFQYTVEAYKVFQKFAENVPNPVARTMFKQFAVDEREARDLLEIKEAAIEGSKVRVTLGADMIFNELLEGEMSFRETAEFLIARERTMQRKVRELIGSAGAGDRNLLLHVESLKRSHIVELERELELIKHDRDWWKREDAEWRIVHGSPE
Ga0209347_1010796Ga0209347_10107966F057405MEPQGEPAWYERETPADVIRRIKRTAFVAAGVFAVFSAVYGGFRGFLGLTCSAAVTMISFLWLEEIVDVLLQPAAHLHARRLTLRTLARFALLGVALTVTIIIARFNAVSVLLGFSIIVVGICGEALYSLYRSFAG
Ga0209347_1012245Ga0209347_10122453F081525MRTALFASLVALTVAGSASAACMNKFVARSERPHQVVTLLTGKLTFQEAQALAAAIQKKQAPPVQWVDANGRTISSQFGELKVVRPMPVGCDGRASGVVVIATFPNAVPPVRKMMVKLGDDNVVEFEEQQ
Ga0209347_1012938Ga0209347_10129382F002324MGEVRLFQICYEGELTVDVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRTSLAPEARLLVACTQFTTARDFLLVKHSLTPDADYSELHGALERLGPVIPLPFESTFVIQTNDRTDVQTLGTALGELCPDESLMVTGVSHDWAYSDAGLSRMCVAGASDVELQFRGF
Ga0209347_1013543Ga0209347_10135432F004903VSRYLQKISLKPYSDAEIWTGWELENRTGEVEGLVLADGMSDEELRSQYGVTEFQKIPAEYLEIGEFRPRQE
Ga0209347_1013968Ga0209347_10139682F067094MSYTNWLRRQVQKLEAEIGRTSIFDTAAPPTARDLQELRSKVVIHTYLKQQLLRRETITPVADDEEFDTQEFLIRRTG
Ga0209347_1017064Ga0209347_10170644F011178MSASTAVMHITIKDRGTHLREKLRVRLDQAAELRCEQHGEPVTAVTIHARENGWFDARWTTCCPDLEQRAVAIVKDRC
Ga0209347_1018863Ga0209347_10188635F065095MAGTEQKEVIERSIVRARDGVGDRIDELDRHLRTNLDPKTIAKTYAPQMIAGGAVLGVIVGFGLPKVFRKLVTWGVPLAIVAMTIKNARERDELEGLS
Ga0209347_1020147Ga0209347_10201473F039817MHEPTPRQLPERTGKHLCVQCLASISLDEYLRNDHICDECAAKDEYPLASTPDEKPAKKR
Ga0209347_1020702Ga0209347_10207022F066113VLLQTGSEGWQVYQNMGPEFPLRIITDDGECQVVDTPEALLESLDSIDSTDPANRVWVRDVLDRTVRLRMVGGVVEVLELWR
Ga0209347_1021492Ga0209347_10214923F012395MRYDWVYILATIIFVSIVVTMVLAVASYFAYKVREARRPKTAGELRREGQVKVFFVPYRP
Ga0209347_1022476Ga0209347_10224761F001750MAKVTADIPSELHRQIERIVRDGWYPDEESVVREAIAHFVDSKTFLGDSPRMLHRFAADALNDSKPDVALKFVSRGISLLAHQKMTDFALYQALAELRVQTLLVLERQPEALAAAEEAREILPNNPVIARWIEKLSVKRG
Ga0209347_1023228Ga0209347_10232284F013826MAVCWRCPRCNEVSCEEDVNAQGHPLACDHCERPFLPQQTICVICDAPNPWARRDSLHYWCRECGNTQTFYGYTATA
Ga0209347_1042231Ga0209347_10422313F097999MENCSYCGTPFPRTRKTRKYCTNRCRTNACLDKKPRLKAADLEALHGVLHAEFASLEEMRERLRLILAPEMPPIPLVDGRAAIPRLD
Ga0209347_1043859Ga0209347_10438592F076426EYLLNYRRDRHLVRSETFSELAELERRMTTIEEIDFFEIGARKPYKLKVRVKADLMRGWLMYVIPWEVETPWRETRVRVAER
Ga0209347_1044288Ga0209347_10442882F013963MNYDLAIMALEGLARAPLSVRNDEGECTLEGSPAAFKELARLCLLLGGVQNAEDAFELTPGVHVTADSPAVRLQLRVE
Ga0209347_1053080Ga0209347_10530802F001750DGWFPSEEALAQEALQQFVEAKSFLGDSPRMLKRFAADALNESKPDTALKFVDRGLSLLATQEHPDLNLYQRLIELRVQILMVLGRGSEALEALEDARELLPNNPAITRWIDRVRKTGLPATVGD
Ga0209347_1053795Ga0209347_10537953F002338MQELKAEKPIESPAGSDPVLRLMDRLADEGFTTEQGPEWWDEYGEIIYRRAEKLPITSGETIFIFTRIPDLNERILRQTSDAVVQTYRAQTIGQKALSVMQSTTVYHCLVCTTDRPHNPSLDEYISRVGGATFIPVVIVPGINEVIYPNLEEKVGVLKPRIEYLQYLLGERRETVDMHKPTIQAMWVTAAVLLLLLVAVIFSFAM
Ga0209347_1055253Ga0209347_10552532F032404MKLEGDLHDIDIIRHLLELAESRFTGAIRFENDGVIKILYLKDGDVLSASTNDRADSVDEILLRAGKVNRDHIRQALGKRKDNETLGDALLALGFIAKK
Ga0209347_1066164Ga0209347_10661641F048553VPIRFTIEERHLTDGKGRPVASQEDVEFHTLDADTVDDAVRLFVRKDEGELIGDVLKFPGFQAIATVRKPNGVFTLQFSPASRQFK
Ga0209347_1076875Ga0209347_10768752F034623ATERLLPHVHIKRYNVPIEIKLDGRRRGSLDHSRKANREANEITLQYKSRQEILLDEELAEEKLVQLLAVIRQLDQTPSGTAELRRRRKLFGVCERIEGETSGQFYARLRHWLDRDIPQRKSPLHAPRQTGD
Ga0209347_1120097Ga0209347_11200972F088355MKNLTTKLNIFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0209347_1120097Ga0209347_11200973F088355MKNITTKLNVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0209347_1122697Ga0209347_11226971F105419GCEVTETLAPGASEGEVIMKHGAPDNIVYLGTPYFNPTTGERGEVDKVLYEYRIGGGTTLLGQLFADDRFHNIAYLIEGGRVMGGGYVGEGSGSIILGNDMGVISTPLGTLDLRFGGFLHPKARAGYGGDGTPSGDVGADVPSSRN
Ga0209347_1135220Ga0209347_11352202F001519MSLVNAVCAEISVYQGIGETTGTLVERRAVRGKAGLCKSMRDLATKSRVLGDGYYYLPVDLWPGEAGPVVINKMDWTVIGSLSRSRGDRKRTRRPSAGDD
Ga0209347_1137761Ga0209347_11377611F046478MLHQPTYAPVPMLAADVNCFWALEQDQESYNREVHLPDAYVEVIINVGAPLLLESDYGLLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWAVKPILNMDADPSTVHVI
Ga0209347_1173005Ga0209347_11730051F039554MRGHVRKRGTPGSWEYIVDIGEAAAQRCRKCNRRFWIERRPKDVCPVCGSTLKETEERRRQTKAGFATKKECLAEMNKLLVAVEQHSYRTPTKATVRE
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