Sample 3300027481

Overview

Basic Information
IMG/M Taxon OID	3300027481 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091572 \| Ga0207459
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	29687619
Sequencing Scaffolds	20
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000569	Metagenome / Metatranscriptome	1018	Y
F002508	Metagenome / Metatranscriptome	553	Y
F006025	Metagenome / Metatranscriptome	383	Y
F006727	Metagenome	366	Y
F009543	Metagenome / Metatranscriptome	316	Y
F012388	Metagenome / Metatranscriptome	281	Y
F015418	Metagenome / Metatranscriptome	255	Y
F017626	Metagenome / Metatranscriptome	239	Y
F020184	Metagenome / Metatranscriptome	225	Y
F022740	Metagenome / Metatranscriptome	213	Y
F027009	Metagenome / Metatranscriptome	196	Y
F044475	Metagenome / Metatranscriptome	154	Y
F053947	Metagenome / Metatranscriptome	140	Y
F063850	Metagenome	129	N
F070071	Metagenome / Metatranscriptome	123	N
F071067	Metagenome	122	Y
F082512	Metagenome	113	Y
F083399	Metagenome	113	N
F087926	Metagenome / Metatranscriptome	110	N
F105468	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F000569

Metagenome / Metatranscriptome

1018

F002508

Metagenome / Metatranscriptome

553

F006025

Metagenome / Metatranscriptome

383

F006727

Metagenome

366

F009543

Metagenome / Metatranscriptome

316

F012388

Metagenome / Metatranscriptome

281

F015418

Metagenome / Metatranscriptome

255

F017626

Metagenome / Metatranscriptome

239

F020184

Metagenome / Metatranscriptome

225

F022740

Metagenome / Metatranscriptome

213

F027009

Metagenome / Metatranscriptome

196

F044475

Metagenome / Metatranscriptome

154

F053947

Metagenome / Metatranscriptome

140

F063850

Metagenome

129

F070071

Metagenome / Metatranscriptome

123

F071067

Metagenome

122

F082512

Metagenome

113

F083399

Metagenome

113

F087926

Metagenome / Metatranscriptome

110

F105468

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207459_100059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1827	Open in IMG/M
Ga0207459_100740	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
Ga0207459_101023	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
Ga0207459_101030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
Ga0207459_101553	Not Available	836	Open in IMG/M
Ga0207459_101643	Not Available	821	Open in IMG/M
Ga0207459_101945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	776	Open in IMG/M
Ga0207459_102291	Not Available	734	Open in IMG/M
Ga0207459_102546	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	709	Open in IMG/M
Ga0207459_102559	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
Ga0207459_102610	Not Available	703	Open in IMG/M
Ga0207459_103170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
Ga0207459_103625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
Ga0207459_104784	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
Ga0207459_105125	Not Available	558	Open in IMG/M
Ga0207459_105248	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
Ga0207459_105384	Not Available	549	Open in IMG/M
Ga0207459_106194	Not Available	525	Open in IMG/M
Ga0207459_106198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
Ga0207459_107084	Not Available	501	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207459_100059

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1827

Open in IMG/M

Ga0207459_100740

All Organisms → cellular organisms → Bacteria

1040

Open in IMG/M

Ga0207459_101023

All Organisms → cellular organisms → Bacteria → Proteobacteria

949

Open in IMG/M

Ga0207459_101030

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

947

Open in IMG/M

Ga0207459_101553

Not Available

836

Open in IMG/M

Ga0207459_101643

Not Available

821

Open in IMG/M

Ga0207459_101945

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

776

Open in IMG/M

Ga0207459_102291

Not Available

734

Open in IMG/M

Ga0207459_102546

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

709

Open in IMG/M

Ga0207459_102559

All Organisms → cellular organisms → Bacteria → Proteobacteria

707

Open in IMG/M

Ga0207459_102610

Not Available

703

Open in IMG/M

Ga0207459_103170

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

656

Open in IMG/M

Ga0207459_103625

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

627

Open in IMG/M

Ga0207459_104784

All Organisms → cellular organisms → Bacteria

571

Open in IMG/M

Ga0207459_105125

Not Available

558

Open in IMG/M

Ga0207459_105248

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

554

Open in IMG/M

Ga0207459_105384

Not Available

549

Open in IMG/M

Ga0207459_106194

Not Available

525

Open in IMG/M

Ga0207459_106198

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

525

Open in IMG/M

Ga0207459_107084

Not Available

501

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207459_100059	Ga0207459_1000594	F087926	TAAQRWRELAELAERREAEGPPIPIRFGDASEAVNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGSTYVGLVPLDRQKKKA
Ga0207459_100740	Ga0207459_1007402	F015418	MSIVSRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPHNAAKVAPKLAAQNVKVVVRFFARKPQA
Ga0207459_101023	Ga0207459_1010231	F006025	GESAVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEVFHRYARGDLAWRDTVEWEQDRIMPARPSWTNSWAAYIVLLVVVAGLIWLWHSWRATP
Ga0207459_101030	Ga0207459_1010302	F002508	RWRNSEVSRNFHRLGLLVAAIILTAGLLLMAKDALGLRLWDLLPADIPILARGIAIGLTGIGLVSLAAYGIVRGIGWAIDKSV
Ga0207459_101553	Ga0207459_1015531	F044475	MRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSP
Ga0207459_101643	Ga0207459_1016431	F000569	MDLHIKRVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLGGFAVTLVFIVAGGLLLVLGAWPFCRPHLREQLP
Ga0207459_101945	Ga0207459_1019451	F053947	SVDKATFEKVRAAVPAHESYMGRALMSGARTGEMIGVAGPAALSAGLSAAGFRKEDVPRLGSIVMEHLRPSLGNEVIERFLAGAPVLRA
Ga0207459_102291	Ga0207459_1022911	F070071	MLTIIGATLVAGTSTGFWYLLPRNGKEHSLVENTGVGSMVTIVILTLFIVGVAVLCEGLL
Ga0207459_102546	Ga0207459_1025461	F006727	LGEGPAAAFALVLAGCASSEQGVLLVDNEERVRGCRPLGTVSDNEMEDLQKKAAKLGGNVALMTPQRKAKGGMFGMQEYMTADVYSCQASK
Ga0207459_102559	Ga0207459_1025591	F063850	MRLVVVIGVAALVALPEIANAASVQEVFQEFGLFGTWAADCNSPATPGNPYVNIIAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTSVSVQVIFQPGTTVEERQKLVFSVNNNTRRTIFNQSDA
Ga0207459_102610	Ga0207459_1026101	F027009	MVASKMEADIIAEYFKKSKQNLQSEHDSMIQDVKQDISSYKKK
Ga0207459_103170	Ga0207459_1031701	F009543	VAKATYLRSEPEVTEMLRIWLMAMLAAAMFGVVRHTDVLHRAGLTGYCTTAPHPAGTTGHWRVCEKGVLNGRPDLSRQRCTRRGQDGSVEYWRCPAARARSARG
Ga0207459_103625	Ga0207459_1036251	F020184	DPTLLEDLRGYLLKNGCPSESRSVDICEVRVLWSEGERSDSADRLKIFGHLREWCAEHPGVKANILTA
Ga0207459_104784	Ga0207459_1047842	F082512	MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRT
Ga0207459_105125	Ga0207459_1051251	F012388	LARPLTRTMKPVQDSDKRHANGHPAKRWLVVVARGQTDLYAHLVQAFSRDGKVKVILDRRKDDSRNSPQVTHRLRTHGAVIIRQAG
Ga0207459_105248	Ga0207459_1052481	F017626	MPLPERHESRSILSPVKPETGPKRVPVAARLAVLLDVFSPWDEISLSYRQFAAALGGGVTEAAIKKWPHREKFPADVARLIVTKAKDMGIPDVTLEWVLWGEGSGPQKGTKKVPVKPQQH
Ga0207459_105384	Ga0207459_1053841	F083399	RSMVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFQTDIYHAANSVGQLPLLLAAVVATRSPKTAPGCGLSTSRAAS
Ga0207459_106194	Ga0207459_1061941	F022740	AENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGWKIVQLKPER
Ga0207459_106198	Ga0207459_1061981	F071067	MPASLTRRQLLQASGLTLGALSLGRSAFGQTPKDGGTFISARTTEATGLDPQLVPA
Ga0207459_107084	Ga0207459_1070841	F105468	YLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS

Scaffold ID

Protein ID

Family

Sequence

Ga0207459_100059

Ga0207459_1000594

F087926

TAAQRWRELAELAERREAEGPPIPIRFGDASEAVNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGSTYVGLVPLDRQKKKA

Ga0207459_100740

Ga0207459_1007402

F015418

MSIVSRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPHNAAKVAPKLAAQNVKVVVRFFARKPQA

Ga0207459_101023

Ga0207459_1010231

F006025

GESAVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEVFHRYARGDLAWRDTVEWEQDRIMPARPSWTNSWAAYIVLLVVVAGLIWLWHSWRATP

Ga0207459_101030

Ga0207459_1010302

F002508

RWRNSEVSRNFHRLGLLVAAIILTAGLLLMAKDALGLRLWDLLPADIPILARGIAIGLTGIGLVSLAAYGIVRGIGWAIDKSV

Ga0207459_101553

Ga0207459_1015531

F044475

MRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSP

Ga0207459_101643

Ga0207459_1016431

F000569

MDLHIKRVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGQPYTLPHFLGGFAVTLVFIVAGGLLLVLGAWPFCRPHLREQLP

Ga0207459_101945

Ga0207459_1019451

F053947

SVDKATFEKVRAAVPAHESYMGRALMSGARTGEMIGVAGPAALSAGLSAAGFRKEDVPRLGSIVMEHLRPSLGNEVIERFLAGAPVLRA

Ga0207459_102291

Ga0207459_1022911

F070071

MLTIIGATLVAGTSTGFWYLLPRNGKEHSLVENTGVGSMVTIVILTLFIVGVAVLCEGLL

Ga0207459_102546

Ga0207459_1025461

F006727

LGEGPAAAFALVLAGCASSEQGVLLVDNEERVRGCRPLGTVSDNEMEDLQKKAAKLGGNVALMTPQRKAKGGMFGMQEYMTADVYSCQASK

Ga0207459_102559

Ga0207459_1025591

F063850

MRLVVVIGVAALVALPEIANAASVQEVFQEFGLFGTWAADCNSPATPGNPYVNIIAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTSVSVQVIFQPGTTVEERQKLVFSVNNNTRRTIFNQSDA

Ga0207459_102610

Ga0207459_1026101

F027009

MVASKMEADIIAEYFKKSKQNLQSEHDSMIQDVKQDISSYKKK

Ga0207459_103170

Ga0207459_1031701

F009543

VAKATYLRSEPEVTEMLRIWLMAMLAAAMFGVVRHTDVLHRAGLTGYCTTAPHPAGTTGHWRVCEKGVLNGRPDLSRQRCTRRGQDGSVEYWRCPAARARSARG

Ga0207459_103625

Ga0207459_1036251

F020184

DPTLLEDLRGYLLKNGCPSESRSVDICEVRVLWSEGERSDSADRLKIFGHLREWCAEHPGVKANILTA

Ga0207459_104784

Ga0207459_1047842

F082512

MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRT

Ga0207459_105125

Ga0207459_1051251

F012388

LARPLTRTMKPVQDSDKRHANGHPAKRWLVVVARGQTDLYAHLVQAFSRDGKVKVILDRRKDDSRNSPQVTHRLRTHGAVIIRQAG

Ga0207459_105248

Ga0207459_1052481

F017626

MPLPERHESRSILSPVKPETGPKRVPVAARLAVLLDVFSPWDEISLSYRQFAAALGGGVTEAAIKKWPHREKFPADVARLIVTKAKDMGIPDVTLEWVLWGEGSGPQKGTKKVPVKPQQH

Ga0207459_105384

Ga0207459_1053841

F083399

RSMVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFQTDIYHAANSVGQLPLLLAAVVATRSPKTAPGCGLSTSRAAS

Ga0207459_106194

Ga0207459_1061941

F022740

AENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGWKIVQLKPER

Ga0207459_106198

Ga0207459_1061981

F071067

MPASLTRRQLLQASGLTLGALSLGRSAFGQTPKDGGTFISARTTEATGLDPQLVPA

Ga0207459_107084

Ga0207459_1070841

F105468

YLEVDHLKKLGDWLRRHKNGTTSVITAESLARLPKGSKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027481: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences