NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027442

3300027442: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027442 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072115 | Ga0207598
Sample NameSoil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size12926369
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea7
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.4Long. (o)-85.37Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002896Metagenome / Metatranscriptome522N
F005305Metagenome / Metatranscriptome405N
F019548Metagenome / Metatranscriptome229N
F040398Metagenome / Metatranscriptome162Y
F045731Metagenome / Metatranscriptome152N
F057496Metagenome / Metatranscriptome136N
F068543Metagenome124Y
F068551Metagenome124N
F068808Metagenome / Metatranscriptome124Y
F070698Metagenome / Metatranscriptome123N
F075479Metagenome119N
F086321Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207598_100210All Organisms → cellular organisms → Archaea2071Open in IMG/M
Ga0207598_100381All Organisms → cellular organisms → Archaea1448Open in IMG/M
Ga0207598_100537All Organisms → cellular organisms → Archaea1096Open in IMG/M
Ga0207598_100548All Organisms → cellular organisms → Archaea1089Open in IMG/M
Ga0207598_100734All Organisms → cellular organisms → Archaea874Open in IMG/M
Ga0207598_100767Not Available851Open in IMG/M
Ga0207598_100813Not Available818Open in IMG/M
Ga0207598_100864All Organisms → cellular organisms → Archaea777Open in IMG/M
Ga0207598_100962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium720Open in IMG/M
Ga0207598_101180All Organisms → cellular organisms → Archaea629Open in IMG/M
Ga0207598_101431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales564Open in IMG/M
Ga0207598_101872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207598_100210Ga0207598_1002101F075479RAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207598_100381Ga0207598_1003813F068551MQLGVIVIFIFVILGIVFFIVFGSGYFKTENPQTKNLQNRSTVVFPNADSIPPECKYNPNDLLCQFQLEKQKMKLLQNE
Ga0207598_100537Ga0207598_1005372F005305VEDLDKELGPLIENFQNLVKDAKAKKLESLREDEDFKEEFNQLSKDVIEPVMRKFESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207598_100548Ga0207598_1005482F019548GGILFILHKSFSSDSKPPEEQTSVVRDDERKSAIFEINFGTVAGLSMLFECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYEDGLKSAPVEQSELVHRVNQAIDKCHEYMLNSVELDKKVYVDASDRMSGYVKLTRIGEYIREIHPDLFIDNNTKSE
Ga0207598_100734Ga0207598_1007341F002896MDKINEDAILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH
Ga0207598_100767Ga0207598_1007671F070698MVILNISETWNNGHNTTFRDSYLEDDNSEILPNGNAPYVIKGNGDCMIIVHADALGASKNFGDGH
Ga0207598_100813Ga0207598_1008131F086321MNPSKKETYKILERFTSQKGGILFILHKSFSSDSKPPQEQTSVVRDDERKSAIFEINIGTVAGLSMLCECEKVLADQVMSLDFLDSGIEGDVIWFGGILDKSGSEFIGS
Ga0207598_100864Ga0207598_1008641F057496HNSAYCKDEHVFGDRGEPLRLSHLIAFNVIEDAEHITGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGNPTVMKNIDAYLRKNLLESEYGLKL
Ga0207598_100962Ga0207598_1009623F068808YFLTGDPIVDVVIDDPARLDGNPARLIVADIDQGGEVSSSVAAAMTLGDGATGYLVVAIFPSGGWDDERADFERIVRSFRTDVPPGLETFPVDDQAS
Ga0207598_101180Ga0207598_1011801F068543DNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVP
Ga0207598_101431Ga0207598_1014311F040398SNEFEAVMPSNIKVLAKGSSAVPNFLRLCVATSGKVLSERRDDLVKFVAAEMDAYKFALANRAETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207598_101872Ga0207598_1018721F045731PVDEPAFCEQAAFLANALVLSDADAVFDLSRRVSMDCADLERDLFPQCDHEDTLDGYVVGDHQGHLFVYGPADYRRTLGFFVEAVDPDYSDELGGAQMQILGVSTCGKGADTSYHLVYLVGLGDPNSTLPADRFLGTYELTKVDGDWAIGATYVGLYTDWQLVLDDP
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