NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026799

3300026799: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A2a-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026799 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091574 | Ga0207485
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A2a-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24042988
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001437Metagenome / Metatranscriptome695Y
F001604Metagenome / Metatranscriptome664Y
F004034Metagenome / Metatranscriptome456Y
F005549Metagenome / Metatranscriptome397Y
F007061Metagenome / Metatranscriptome359Y
F007935Metagenome / Metatranscriptome342Y
F008396Metagenome / Metatranscriptome334Y
F017145Metagenome / Metatranscriptome242Y
F022036Metagenome / Metatranscriptome216Y
F022101Metagenome / Metatranscriptome216Y
F022675Metagenome / Metatranscriptome213Y
F028554Metagenome / Metatranscriptome191N
F031938Metagenome / Metatranscriptome181Y
F034987Metagenome / Metatranscriptome173Y
F039286Metagenome / Metatranscriptome164Y
F051447Metagenome / Metatranscriptome144N
F059116Metagenome134Y
F072675Metagenome / Metatranscriptome121N
F077473Metagenome / Metatranscriptome117Y
F089000Metagenome109N
F094116Metagenome106Y
F095664Metagenome / Metatranscriptome105N
F099457Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207485_100124All Organisms → cellular organisms → Bacteria1234Open in IMG/M
Ga0207485_100314All Organisms → cellular organisms → Bacteria1013Open in IMG/M
Ga0207485_100437All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium940Open in IMG/M
Ga0207485_100726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium836Open in IMG/M
Ga0207485_100801All Organisms → cellular organisms → Bacteria815Open in IMG/M
Ga0207485_101419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium704Open in IMG/M
Ga0207485_101499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium694Open in IMG/M
Ga0207485_101535Not Available688Open in IMG/M
Ga0207485_101614Not Available680Open in IMG/M
Ga0207485_101880All Organisms → cellular organisms → Bacteria654Open in IMG/M
Ga0207485_102289All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae620Open in IMG/M
Ga0207485_102570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium601Open in IMG/M
Ga0207485_103074All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria572Open in IMG/M
Ga0207485_103078Not Available571Open in IMG/M
Ga0207485_103772Not Available538Open in IMG/M
Ga0207485_103822Not Available536Open in IMG/M
Ga0207485_103941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria532Open in IMG/M
Ga0207485_104049Not Available527Open in IMG/M
Ga0207485_104291Not Available518Open in IMG/M
Ga0207485_104386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
Ga0207485_104403Not Available514Open in IMG/M
Ga0207485_104451Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207485_100124Ga0207485_1001241F031938MQKRLVTRYAMRSAEAAAENQRRVEGVFEELAAAKPDNVSYIVLRLA
Ga0207485_100314Ga0207485_1003141F022036MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSM
Ga0207485_100437Ga0207485_1004371F007061RGLRQATWTAVLAAVVLAVATGCGGGGGESGNEESELNQQAVAACNGSALSEAPNLPASFPMIENVTYTKQSTQGPTTVVEGFFEGSLEDAYDEYKKELEAAGFKILFDEIEEHDSEVSWEGEGRSGQVALREECGSDDKIYVHITNRPASE
Ga0207485_100726Ga0207485_1007261F039286VLREVAEYPNCFGPLGPGAERIETDRYTLCLGPGSTWNTVQRQRFALEEL
Ga0207485_100801Ga0207485_1008012F022101PFALECAELAQSPATRGAVVISIWFDPADDGNPRQNISYERAE
Ga0207485_101419Ga0207485_1014192F001437MAGFLFRLETVDGAPAEPPTFATAVPNWSPGDEIPLGHRALRVIGKRDDDADQPPMLIVEHEE
Ga0207485_101499Ga0207485_1014992F089000MGEPTPATPASKYFAATVAMIAGACFFAVGAGLLPIPGGPSNLHGPLLLVLCVGLAFFLAGLAIIIQLLGHANDSGDLPAGAPLWLRAMQYLIGLCIFVCFGAISSWIAFGPGERHFSGT
Ga0207485_101535Ga0207485_1015352F004034TVCSIVEHGGELLMVQQLNREGEVRWNFPTGWMEPLDEDGTLQVPEHVVNRNLLVETGYAASGATLVGLALVREHDAEGRRIGTSTRLNYLSSQPRQTSYAVADSDILGAPEWFSPAEVEGMIQRGEVKGELTTAAYRHWQAYRRDGRISADVIDTPN
Ga0207485_101614Ga0207485_1016141F007935LVLALVSALVAVSAAVAKDHPGKGPKPNHGCKPAVTVMLAGTLAADVDPQDGDTSFVLTVKHSNRHGRAYKATGTATILVDAKTHVRRQGAKTLGALAPNDRVHVTAKACKADLKNGGTPDLTARKIGAHPVAAPTQPSS
Ga0207485_101880Ga0207485_1018802F094116EAFDVAATQIRIADLEERTGLDFADIKKFDHFATGGASGTLELPGVEGMVRRAKIVRNGSDIVV
Ga0207485_102289Ga0207485_1022892F028554NYVRTALLLAALTGLFFLAAFVTAGSLLSTDPRPMSSLSKVTQLPPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLESERDSTPSENINRERIRAILGAFKK
Ga0207485_102570Ga0207485_1025702F051447MCAVCRRNLLAGESFRTWQVRHERTAGRIVCLLCEHEAVREGWLRSGDPLRHENAVGLRGSVRRVA
Ga0207485_102860Ga0207485_1028601F095664DTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCVMSQRGTGATNVVTGVDVGRVLDTQQRRRNALKETYQHVT
Ga0207485_103074Ga0207485_1030741F072675RRKHPPVVRHAALERGDTMRGIVKAVAMGLGLTAAAALASAPAFSKDYVRYRIYRQNPAAWYWFGPPGRGEHIAPKARVAAQGYYIGPHYRSDIAPGYHTNGPGIGIMK
Ga0207485_103078Ga0207485_1030781F034987VDVRITPEPDDRDAVLAAVQALLARDRVPAAYRSGWREAGIRENLGYERPQGATGLP
Ga0207485_103772Ga0207485_1037721F059116MFTKPRLLAVCAAIVLGSLVLVVGAIGASDSGTSDKIAFRSGANASTPSGSFIDIPGGARTVASTAGGPLVIRFSAEGSVRDLNSGGAFAGHRFAAMFVRVLVNGSQVGPAVRFFDNTGKVGVQKPRPTTTSYEWAKTVSGGPQNVKVQFKNLNTFDNANIK
Ga0207485_103822Ga0207485_1038221F001604MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINTGGRSWLEE
Ga0207485_103941Ga0207485_1039411F008396PRYVEALEELRPLVDRRDGHTPELAPLWEEMTSVRRSQPAGTVW
Ga0207485_104049Ga0207485_1040491F077473MSLFTRRKVIGLFRLAGLAVPFKFSPLLAAEAQAATNTSDVHLLSQDARPPPSVPLQDARLCAPASDRPRSDSNLPNVNWLRGNEARAEWTWAAQLSDGSPEAVPNNLGRYLVQIPGVLEKQLDYS
Ga0207485_104291Ga0207485_1042911F017145WCPRFGHAMIAHRSSHRRWMLRDIPRTYVLLTWLAFGAALLIYSNDWHPSGWTALRKEATAPKPPVSVTEQYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207485_104386Ga0207485_1043862F099457LEVVRPHGQWIPQQMVFLAVLIIPLVGLWQIVSPMKLTGLWTLMAPLVGAYLVAHYYAFDVYDGAPYYRNSEAGDMPGWAILGGASVAAATGALTWFHRRLGVGLTAPVCLGCAVLIFFSNVFH
Ga0207485_104403Ga0207485_1044032F005549MLKFLRKCTAIPAVKYSIIAITSFLWLVGFADQLPDVEQTVKYVGISLLMLAVAAMA
Ga0207485_104451Ga0207485_1044511F022675MRNLRRNWFIKRIALGLAIAAFAAPVAQAKVDEGSSIQANGYQAFVTDFPSYANGVNASDYGMPRPTATDYAISRGDLIEVVRSTPNGTSSDKIEFVRTQPRSIGEPQVVAAGFDWKDAGIGAGFALALVLLGG
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Biomedical Sciences Research Center "Alexander Fleming"
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