| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026798 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091575 | Ga0207515 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 17679026 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004992 | Metagenome / Metatranscriptome | 416 | Y |
| F026346 | Metagenome / Metatranscriptome | 198 | Y |
| F045732 | Metagenome / Metatranscriptome | 152 | N |
| F084203 | Metagenome / Metatranscriptome | 112 | N |
| F085515 | Metagenome | 111 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207515_100137 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 859 | Open in IMG/M |
| Ga0207515_101206 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 574 | Open in IMG/M |
| Ga0207515_101403 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 554 | Open in IMG/M |
| Ga0207515_101480 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 548 | Open in IMG/M |
| Ga0207515_102077 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207515_100137 | Ga0207515_1001373 | F045732 | CVCAGHVVCNMRHRRRRVFIDTQKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA |
| Ga0207515_101206 | Ga0207515_1012061 | F084203 | MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPVQTEWSNSVGADLAPSKPTAYPLPLSTERNNGMPAGAAWASVGVPNLASVDARVDPTNEQGKV |
| Ga0207515_101403 | Ga0207515_1014032 | F004992 | MSNETPAAIDPDMFAAVFSENWDNARYIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLVGLLTSLRLKSELEECLAKIEAMTVQAKVSHFVALGQLEGRPSRYPRFRWIFPIFYTMTTAGFI |
| Ga0207515_101480 | Ga0207515_1014801 | F026346 | PPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK |
| Ga0207515_102077 | Ga0207515_1020771 | F085515 | QQLYRQSEARLEQANRTLGQAVFERLLLLDATLKSIPPNAVLQLAAAKRIPRVAPPVRRPRPKLGNQTQAGSLDGRVAMGGIIIDRTARLSAKRSRTDLIEASKALIAGLDLLARQRFAAVEFVGDDNKSIEVFGRLSRRPRLSARDSSDLRLGLPLVSVVHFGGGPRVY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |