Sample 3300026785

Basic Information
IMG/M Taxon OID	3300026785 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072070 \| Ga0207496
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0095510 | Gp0072070 | Ga0207496

Sample Name

Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	25724208
Sequencing Scaffolds	27
Novel Protein Genes	28
Associated Families	28

Dataset Contents

Total Genome Size

25724208

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
Not Available	10
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Not Available

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → agricultural field → agricultural soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Wisconsin, United States

Coordinates

Lat. (^o)

43.3

Long. (^o)

-89.38

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000336	Metagenome / Metatranscriptome	1274	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002103	Metagenome / Metatranscriptome	593	Y
F003167	Metagenome / Metatranscriptome	504	Y
F004992	Metagenome / Metatranscriptome	416	Y
F005683	Metagenome / Metatranscriptome	393	Y
F008198	Metagenome / Metatranscriptome	337	Y
F017145	Metagenome / Metatranscriptome	242	Y
F022740	Metagenome / Metatranscriptome	213	Y
F023976	Metagenome / Metatranscriptome	208	Y
F029488	Metagenome / Metatranscriptome	188	N
F032172	Metagenome / Metatranscriptome	180	Y
F037890	Metagenome / Metatranscriptome	167	Y
F039117	Metagenome / Metatranscriptome	164	Y
F039759	Metagenome	163	Y
F043606	Metagenome / Metatranscriptome	156	N
F048418	Metagenome / Metatranscriptome	148	Y
F049092	Metagenome	147	N
F050525	Metagenome / Metatranscriptome	145	N
F063910	Metagenome / Metatranscriptome	129	N
F070698	Metagenome / Metatranscriptome	123	N
F075211	Metagenome	119	Y
F077270	Metagenome / Metatranscriptome	117	Y
F077755	Metagenome	117	Y
F084203	Metagenome / Metatranscriptome	112	N
F089980	Metagenome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207496_100314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1236	Open in IMG/M
Ga0207496_100632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022	Open in IMG/M
Ga0207496_100913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	922	Open in IMG/M
Ga0207496_100920	Not Available	919	Open in IMG/M
Ga0207496_100938	All Organisms → cellular organisms → Archaea	915	Open in IMG/M
Ga0207496_101111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	874	Open in IMG/M
Ga0207496_101259	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
Ga0207496_101597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
Ga0207496_101741	Not Available	759	Open in IMG/M
Ga0207496_101830	Not Available	746	Open in IMG/M
Ga0207496_102096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
Ga0207496_102318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693	Open in IMG/M
Ga0207496_103145	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
Ga0207496_103550	Not Available	604	Open in IMG/M
Ga0207496_104279	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
Ga0207496_104612	Not Available	556	Open in IMG/M
Ga0207496_104683	Not Available	553	Open in IMG/M
Ga0207496_104714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
Ga0207496_104821	All Organisms → cellular organisms → Archaea	548	Open in IMG/M
Ga0207496_105063	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
Ga0207496_105153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	536	Open in IMG/M
Ga0207496_105286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
Ga0207496_105510	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
Ga0207496_105857	Not Available	514	Open in IMG/M
Ga0207496_105912	Not Available	512	Open in IMG/M
Ga0207496_105958	Not Available	511	Open in IMG/M
Ga0207496_106014	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207496_100314	Ga0207496_1003141	F001033	MKFVSRTKLTAVPYQIHLHTNEKRELLMCGHSLIARLTIAVFVFQMLGVSSVVHAESPDSTAGTSSAGTRKLFIGPSSSFVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPGPRP
Ga0207496_100632	Ga0207496_1006321	F077755	MITDVNPFVYSRPIAPDQIVDRDEETQLLLKNAVGGH
Ga0207496_100913	Ga0207496_1009131	F004992	MSNETPAAIDPDMFAAVFSQNWDNARHIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLAKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTAGFITLIVYRLVTGEAVK
Ga0207496_100920	Ga0207496_1009201	F039759	RLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRASRNLFSSVFDLGRVPATLDELMLERLDGRGDLIAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVA
Ga0207496_100938	Ga0207496_1009381	F005683	MEKSNGTKIMGILLVFGLVVYSIYFGQISFVEGVELKTVGKGAISCGNGEEVKGVRINFFVSYDGGTPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG
Ga0207496_101111	Ga0207496_1011111	F003167	MEPTITQNGALFAVQQRSIKRNCSQHHHRQIASPNKTISTLRTSVGEFVFRQTPLGCYLELVVGNTRWALGLYGTNEAAVRALKNGRTGFRTWDALGGKTAANQIGTLSRWNKGEQTP
Ga0207496_101259	Ga0207496_1012591	F063910	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGDKK
Ga0207496_101597	Ga0207496_1015972	F001757	MRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRSRPDQPDRTKVV
Ga0207496_101741	Ga0207496_1017413	F029488	MHQIALMTLAALLLAGCASGYSPECVTGTGTKDCASGTLGHQQMTQEREGDETVASIDDARCRAHAAPGSSEYLACRQRAAKSRGAGR
Ga0207496_101830	Ga0207496_1018302	F022740	LKRLGAENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIRKLGWKIVQLKPDR
Ga0207496_102096	Ga0207496_1020962	F048418	LQGTCKENLRYINVATGFAGKSNREDDSKIVDVRMPIHLPPKARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRF
Ga0207496_102318	Ga0207496_1023181	F023976	CRSPKTDFNYQVATLDDVRSRYVGDCKPPFYALSRDYFTREAHQHFATEAAAFFLLMMTSVLPLFNGANAVVELIRSTWGAF
Ga0207496_103145	Ga0207496_1031452	F075211	RTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207496_103550	Ga0207496_1035502	F039117	PKLRCVYLEVTLVNGQNYSIPVEDGHSVEEELELFLRREGRYAADWVQLQKASRKLFVRYEQIILVSPMD
Ga0207496_104279	Ga0207496_1042791	F000268	MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYHDSTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207496_104612	Ga0207496_1046122	F017145	AALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE
Ga0207496_104683	Ga0207496_1046832	F032172	VAELAMFVSHMDGIGRAMTMMQLEGEEPVQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207496_104714	Ga0207496_1047141	F002103	MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHEAMTLPGQALRIDLRPAFRKPLADVTPKFRAVSIGYTFTPQR
Ga0207496_104821	Ga0207496_1048211	F089980	MDLESIIELIVMNWLGIFSLIATIIIGFTTIRYRNKQHQINGLLDAFRILNTREHRTSRRKVYDLYIEYEKNKDVRTFDNSPEVVDVRADFDVIGTLVKSRNIDEKLFLIEYGPLAYRCWKYLKNHIEAERKKRNFDPFMMNFESLAGKADNFWLKRGYDLSKTLL
Ga0207496_105063	Ga0207496_1050631	F070698	MAILNLSETWNNGHNTAFRDSYLDDDNSKILPNGNAPYVIKGNGDCMIIVHADALGVSKNFGDGH
Ga0207496_105153	Ga0207496_1051532	F037890	MKTLAKHVAARLEARAFCVVFENDLERLWPSNKMARAKRKKEIQSFAESQGWIAEVVEGGFGARAIFREGLNRG
Ga0207496_105286	Ga0207496_1052861	F077270	AGFPFTASILLLAGPALTWAVIPVAFSPYGQGPLRDVGWKVELVWLPVMALASSALLYRAHGRRRARLDGRPPRGKALRKSGYRARVSAALGGMALLLVAIPFVPALAGIGGSTVRYSYEPRLTPEVTGQFVSTKRGPVKLFAWSDPQSKTPADALRLHARDVRSLLVRAAALDAAK
Ga0207496_105510	Ga0207496_1055101	F043606	IVNLKGQFDADAAHLQIKASRGKITPALATEMKNDVNKTYDHALGR
Ga0207496_105510	Ga0207496_1055102	F000336	MPSAGKTKRGKSLRKTSGKKSALDSAFDQVTDESVAASMQEFRDLLAQAKGDTNELIRQNAQELEERLILLKKRKIDKEDFDFFVENQKRDLSVFIDSQPAQSQERAEKLTLHILEIAATKVVPVLIMMI
Ga0207496_105857	Ga0207496_1058571	F084203	MRARVRRAMWMLGALALAVPASAQESTDVAPLTPEDSALLANALVFDPAALVTAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAGAA
Ga0207496_105912	Ga0207496_1059121	F049092	TGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQ
Ga0207496_105958	Ga0207496_1059581	F008198	MPLNEIPKHIGPQTRSLIEAALEDAWQELIKDGNLEAAPARNKLRTTMVALASVGETDHRKLKWFAIHAWKGALQAEQSARRVRANGPAA
Ga0207496_106014	Ga0207496_1060141	F050525	MRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQKHKKEHVTRKQPHEAPFTDAGRNAYGYAEEPRRIDPNRFLFFGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026785: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences