NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026728

3300026728: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN412 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026728 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053063 | Gp0054777 | Ga0208069
Sample NameForest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN412 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18697796
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola1
Not Available6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWillamette National Forest, Oregon, USA
CoordinatesLat. (o)44.20517707Long. (o)-122.1284473Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003446Metagenome / Metatranscriptome486Y
F003950Metagenome / Metatranscriptome460Y
F005285Metagenome / Metatranscriptome406Y
F005677Metagenome / Metatranscriptome393Y
F007287Metagenome / Metatranscriptome354Y
F012680Metagenome / Metatranscriptome278Y
F018458Metagenome / Metatranscriptome235Y
F019049Metagenome232Y
F025700Metagenome / Metatranscriptome200Y
F026103Metagenome / Metatranscriptome199Y
F031228Metagenome / Metatranscriptome183Y
F040241Metagenome / Metatranscriptome162Y
F060292Metagenome / Metatranscriptome133Y
F061248Metagenome / Metatranscriptome132Y
F068031Metagenome / Metatranscriptome125Y
F070327Metagenome / Metatranscriptome123Y
F086078Metagenome / Metatranscriptome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208069_100164All Organisms → cellular organisms → Bacteria → Proteobacteria1271Open in IMG/M
Ga0208069_100209All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1174Open in IMG/M
Ga0208069_100250All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola1101Open in IMG/M
Ga0208069_100408All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium937Open in IMG/M
Ga0208069_100783Not Available760Open in IMG/M
Ga0208069_100935All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium718Open in IMG/M
Ga0208069_101406All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068635Open in IMG/M
Ga0208069_101462Not Available627Open in IMG/M
Ga0208069_101826Not Available586Open in IMG/M
Ga0208069_101901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium578Open in IMG/M
Ga0208069_102134All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium561Open in IMG/M
Ga0208069_102141All Organisms → cellular organisms → Bacteria561Open in IMG/M
Ga0208069_102197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium556Open in IMG/M
Ga0208069_102658Not Available527Open in IMG/M
Ga0208069_102781Not Available521Open in IMG/M
Ga0208069_102820Not Available519Open in IMG/M
Ga0208069_102822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia519Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208069_100164Ga0208069_1001641F061248LAIFVDPSLVMRTLSSFNHSGPDKVPIAISLRQTALKASVGIDPIERRPSSGGHPGWAIPHGTAPL
Ga0208069_100209Ga0208069_1002094F070327FTSALQNSYYPRHYRTFDNTMSRFEGALSSDATTYLLRELTPDLKRLFRKHAPKTVQKIEEKLPIPADDKP
Ga0208069_100250Ga0208069_1002501F068031KITAILDETRWDEFYMTHNATTINEKGKHWQYAVPRGVVQRSSTLLVLESPRMSLTRDALWHNGL
Ga0208069_100408Ga0208069_1004081F019049TTKPLEAYEAQLLMAAGDLSRVRAAPMWRRVSVLK
Ga0208069_100783Ga0208069_1007832F018458MGGGYVPDSGRQSPSYSFSNLVPVRHWARDPALRSWPVLLLVAVADALL
Ga0208069_100935Ga0208069_1009351F003446QGSLVGAIERHIETAQQNLDTMATGTVERVQRNLETSRTKATERFVLRLREQVAPVMEEARADVQKLVASQTVFKEESLAIYRRVTDQLESDANARLLQTHDQLEKSSTSVVNECNEKMLELSQAFEKIARDSAQNMIASATDEGNKNLEERASEISSHFADQLEGHVRSYLEFIGKSIKEFPMNPPAA
Ga0208069_101406Ga0208069_1014061F007287MPEGFPVRFNPRHKTVLLCLCLVSFGAAPLCAASGWNYTESHSDAREFAAGGFVHVRLSVGDMHIRRGDSNKISLRYTVKSGHQRNVKEARVDFEVRGNDATIEFHSPSGGDTQFDVEVEVPQKTNLDVHDKVGDVTVENVEGDKDVTLGVGDIRVNNGREGYRQVNASAGIGDVHGDGYGETSGWLGKTLKYHGEG
Ga0208069_101462Ga0208069_1014621F003950MMPTDHLFRKGAATMRDSQPMIASKLDLSPCAVSVLGQLFVEGPTSDDNITSKAGRCHLVSAGLAFHEAGLSSLTPDGVRLAREWDLCSLYARRDRRWYLKVRTNMRPEGAAVSHSKSGTAVR
Ga0208069_101826Ga0208069_1018261F026103MASCEQLAGELKVLEELLKKFSTEHKRQEIIDRIDQIKAEQQERGCLETV
Ga0208069_101901Ga0208069_1019011F031228MDHREIAVRVPVMNEVQFLFASEPCKPLKPRSLYVVFLVEKDVRVERRRTCNYLNHEEINGQYEVCTSSYQKHRNEEEGCIVAFVT
Ga0208069_102134Ga0208069_1021341F005677CLAGFLVCSMLVVSGVRASDNWLQLNNTHGWSISYPASWEAYVMQAPDSGPELSIRESDNVNFDGPKDCYERKARCGHFQIYSASTTPQAELKKYVDEETQNQKIISKEAGQLDGMPAYFIRLPEDQRLVIVKSKSLIFHISYGPNDHKPTDKTLEEIFDRMMSSFKFNK
Ga0208069_102141Ga0208069_1021412F005285KATSATSPAVRTVNARVGVHGVGGDRMAGSWSDMNQGSRTGKGTAFMVERPEELCPGGDRASVVAKKRVNARGAKGGRKVEA
Ga0208069_102197Ga0208069_1021971F012680MDYGFSVVSCTLLPLEVGKDKKHLRSILEPLDLGAWLDLGPRGLRLIPHDPVLPPTYFNPDGSVDLVNKDLYLDDVMSHMERIAAALGCELEWDF
Ga0208069_102658Ga0208069_1026581F086078VKKVEKAVGAGGSTVGNIDSLVNKHLAAFRNAEKTLAQAKALVQTYGKKYPELAGYIPAGAAEERGIHIRQDASDESEGSHKFYIRIKVGEPRYEVVGAGQHDYQQVDAATWAQRFKEQLAISIAKIVFAREAAQAPK
Ga0208069_102781Ga0208069_1027812F025700MAAAMQRRKLLILANDRALRRELEAVFSDLDVTACEASDQA
Ga0208069_102820Ga0208069_1028202F040241MTTEEVLKALERYTEEARESDRQTATKLGVNRMTLTAWLGGRDRPQRCMLARLAGFLRRVGYL
Ga0208069_102822Ga0208069_1028222F060292VALMEAGRLVTVLAPQEFLRSSDPWVAAYVKAFKAGLDSAANRGTE
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