| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026712 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072075 | Ga0207548 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16523797 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 24 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp. | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001437 | Metagenome / Metatranscriptome | 695 | Y |
| F002315 | Metagenome / Metatranscriptome | 572 | Y |
| F005277 | Metagenome / Metatranscriptome | 406 | Y |
| F012159 | Metagenome | 283 | N |
| F015505 | Metagenome | 254 | Y |
| F017538 | Metagenome / Metatranscriptome | 240 | Y |
| F020078 | Metagenome / Metatranscriptome | 226 | Y |
| F020818 | Metagenome / Metatranscriptome | 222 | Y |
| F022731 | Metagenome / Metatranscriptome | 213 | Y |
| F025757 | Metagenome | 200 | N |
| F027310 | Metagenome / Metatranscriptome | 195 | N |
| F027643 | Metagenome / Metatranscriptome | 194 | N |
| F034688 | Metagenome / Metatranscriptome | 174 | Y |
| F038480 | Metagenome | 166 | Y |
| F049206 | Metagenome / Metatranscriptome | 147 | N |
| F052409 | Metagenome / Metatranscriptome | 142 | N |
| F054479 | Metagenome / Metatranscriptome | 139 | Y |
| F055066 | Metagenome / Metatranscriptome | 139 | Y |
| F070538 | Metagenome | 123 | N |
| F071393 | Metagenome | 122 | N |
| F081321 | Metagenome / Metatranscriptome | 114 | N |
| F082926 | Metagenome / Metatranscriptome | 113 | N |
| F084203 | Metagenome / Metatranscriptome | 112 | N |
| F098176 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207548_100106 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 1279 | Open in IMG/M |
| Ga0207548_100227 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp. | 1091 | Open in IMG/M |
| Ga0207548_100291 | Not Available | 1022 | Open in IMG/M |
| Ga0207548_100462 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 900 | Open in IMG/M |
| Ga0207548_100508 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 881 | Open in IMG/M |
| Ga0207548_100540 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes | 865 | Open in IMG/M |
| Ga0207548_100575 | Not Available | 844 | Open in IMG/M |
| Ga0207548_100608 | All Organisms → cellular organisms → Bacteria | 832 | Open in IMG/M |
| Ga0207548_100913 | Not Available | 748 | Open in IMG/M |
| Ga0207548_100989 | Not Available | 734 | Open in IMG/M |
| Ga0207548_101233 | Not Available | 689 | Open in IMG/M |
| Ga0207548_101449 | Not Available | 658 | Open in IMG/M |
| Ga0207548_101501 | Not Available | 650 | Open in IMG/M |
| Ga0207548_101591 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 638 | Open in IMG/M |
| Ga0207548_101639 | Not Available | 633 | Open in IMG/M |
| Ga0207548_101719 | Not Available | 624 | Open in IMG/M |
| Ga0207548_101741 | All Organisms → cellular organisms → Bacteria | 622 | Open in IMG/M |
| Ga0207548_101873 | Not Available | 608 | Open in IMG/M |
| Ga0207548_102028 | Not Available | 593 | Open in IMG/M |
| Ga0207548_102081 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 589 | Open in IMG/M |
| Ga0207548_102385 | Not Available | 566 | Open in IMG/M |
| Ga0207548_102675 | Not Available | 546 | Open in IMG/M |
| Ga0207548_102750 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 541 | Open in IMG/M |
| Ga0207548_103027 | Not Available | 526 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207548_100106 | Ga0207548_1001063 | F054479 | MRHDMESCDQGGEDRNKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ |
| Ga0207548_100227 | Ga0207548_1002273 | F015505 | GSRWEMTMNAIKDQTTKVTPGTYFVHLFQVDADRFQLLSQKPRAPRDCEYLNRPYELSDLMRQATDAGVWPR |
| Ga0207548_100291 | Ga0207548_1002911 | F098176 | HQIHHEDENIALSTAAQLPPQCALVASYRNTSEVTVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRAAMNELNTALEAITDADPIFAPQGLAVVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS |
| Ga0207548_100462 | Ga0207548_1004621 | F001437 | MAGFLFRLETVDGAPAEPPTFATAVPNWSPGDVIPLGRRALRVIGKRDDDADQPPVLIVEHEE |
| Ga0207548_100508 | Ga0207548_1005082 | F022731 | MGTDATIDRIKKELLRAFDNTRAELDRIEILAAGLAAFNAPIPGYEPMFRHLPQLNQNTYELASDETTA |
| Ga0207548_100540 | Ga0207548_1005401 | F038480 | SGKIVRRDTMKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACIMSGTYCIDLCH |
| Ga0207548_100575 | Ga0207548_1005751 | F049206 | VRTTNEIREELDQAIARRAELWNRLAQGSDAETSAELAGLSKTIDELWGEYRTAEARKRFGSPELIHARARTEERLERDSRR |
| Ga0207548_100608 | Ga0207548_1006082 | F070538 | MPATSAGMTENLLFLFPALFAQALAGIVYTRSTFMMNGSDVQYTNPFTGGVLLFTSGGFPQDRSLHYADDHADAGLALAIGGGFDIRLSKRIGLRTAMDYDPTFLVRPVFPDLTPDAEGRVHLGPTSN |
| Ga0207548_100913 | Ga0207548_1009132 | F005277 | GFTQAELEKAKNSKEFFKDGYWKCLATEIVRVAPTNMPVQEFSVFVKRACSKERNDFFASLSNYVAMLHPDAARDTVISATNIAVLDAQKDAVTALVDLRSGKR |
| Ga0207548_100989 | Ga0207548_1009892 | F017538 | MTDSLTLVRASRNRDGEWSSDDYDVFEGKQLVGRVTLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLEFNARWLNPARL |
| Ga0207548_101233 | Ga0207548_1012332 | F020818 | MAGKAALVLVTALVAATVALSGCGGSEPTSFTPEVEDNFVNSCVDSATEGASPANESDAERICGCMYDELKQRMTFEEFKAADDSLREGEQMSAELSATLQAAATACT |
| Ga0207548_101449 | Ga0207548_1014491 | F081321 | VRALCEAREFRYVAVVPVRSVTSGLVMRAVMCTVLRAAALISLALVPVSPTHAACRGNCEPNVEVARGAMQQIFKQTFLSPYTLVSFERLDGRSGERYGGVFYEMRIRAVLHYDGVRLRCRRPSCPELHHYLLENDAASKKATVAGWLFLANDGDGWKTVPLTLQSPQ |
| Ga0207548_101501 | Ga0207548_1015011 | F025757 | LEMAVLIGCVALSIGMRSRPAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA |
| Ga0207548_101591 | Ga0207548_1015911 | F084203 | MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEH |
| Ga0207548_101639 | Ga0207548_1016391 | F020078 | MHSATRFCWQSGVIALATIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGHLIEKRDPQCERVDHYLQASIPVTGAGLLWLHVILQTGPWRDRSIEPGVAVVIVVACGVAGALLMIRRAKRLAGDGSN |
| Ga0207548_101719 | Ga0207548_1017191 | F002315 | MAMLATVTFVADKKTYRYTCKGGAFTVTAAVEASGRWSKAEPVVLQIDSEPPQTLIADPDVPDADSFTNKDYEFYALKTFITLTRKSHGVVVKTYNACRVE |
| Ga0207548_101741 | Ga0207548_1017411 | F034688 | FFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK |
| Ga0207548_101873 | Ga0207548_1018732 | F082926 | MPDISATEQPEQSHIVTWKVISIGTAIVVVVFLFLWL |
| Ga0207548_102028 | Ga0207548_1020281 | F052409 | MTIKEREAALNHRMKAAKNDEAAAGASFGCECADLRCNAKLELTQDERVRRGSRPSRFWVKPGHELDSDHIVETDLRFSVVQLD |
| Ga0207548_102081 | Ga0207548_1020811 | F012159 | MLRLLPILTASTLGVALAVGGYLVLKAAQDTPATSANQQQMEDDASQVAAAVNLQQATPAMEAWFNTTGTYVGAQSQLPASFGVTLVRADKFSYCLQAGSGANVQHMNG |
| Ga0207548_102385 | Ga0207548_1023851 | F071393 | GAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPAAAG |
| Ga0207548_102675 | Ga0207548_1026751 | F027310 | VWELDRALEDDTRAASLFAWLGAAGAFTWLASIVLADSLLPITTITALGALVFGFVGWRATKHGNPREATNFVAISLAVVLAVLWLFLLGSLLLRLF |
| Ga0207548_102750 | Ga0207548_1027501 | F055066 | MLNTQPFTVAIVSVLCCAAVQVDGAKPAKKDSGGNHIQRGIQLAQEKHYDAAADEFGKAIQQNPKDPRGYANRGTAYRQGARTAIAAGDSEGASTRYQAALADF |
| Ga0207548_103027 | Ga0207548_1030272 | F027643 | VAENDQIRLEIAFEGGQIIGGTVSPAVAKAFQEAMAGNGPVFELDAVEGNFLVALGKVVYVKRSSRETQIGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |