| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026706 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054290 | Ga0207925 |
| Sample Name | Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 9556115 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gorham, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 39.05 | Long. (o) | -99.1 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008776 | Metagenome | 328 | Y |
| F025135 | Metagenome / Metatranscriptome | 203 | Y |
| F029894 | Metagenome / Metatranscriptome | 187 | Y |
| F069793 | Metagenome / Metatranscriptome | 123 | Y |
| F093450 | Metagenome | 106 | Y |
| F098847 | Metagenome / Metatranscriptome | 103 | Y |
| F105488 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207925_100343 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 753 | Open in IMG/M |
| Ga0207925_100895 | Not Available | 577 | Open in IMG/M |
| Ga0207925_100896 | Not Available | 577 | Open in IMG/M |
| Ga0207925_101002 | Not Available | 561 | Open in IMG/M |
| Ga0207925_101270 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 522 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207925_100343 | Ga0207925_1003432 | F098847 | RRWTLGGIVLGTLELGLGALLLLTREVNPGLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG |
| Ga0207925_100496 | Ga0207925_1004962 | F105488 | VIIASRLFMAMGLFGLVAGAIYYLAADNPELAGVGLLGAFFAACLYIGIMLWTASPANRRRVPVPDTGLAGSADPKRGAADERGNIHHMAPTWAPVVYSLAATFLLGGFILRKQIAALGPWGIGLGLALFLGATIIWYRNVAVDQRARLAPHGGPTGAEHGVAVH |
| Ga0207925_100895 | Ga0207925_1008952 | F029894 | MMRGQVVAEEAQAWTAGLLLATDYFAHARREAVAKASAAILGRLHRSREATTEDRGTSR |
| Ga0207925_100896 | Ga0207925_1008962 | F093450 | MTHCLRSLPTAMCVRAQTSALGIAIRFKPSEKGKQARESKVEITNTLYAEKDQQPQLSLLEFQAADGSFRQPTEAEVSILTFCKLRYARSRAQELSNEFARLLNRGSSLE |
| Ga0207925_101002 | Ga0207925_1010021 | F025135 | MPAQVALTEAEARAFSSLLRRASDRLETYEEQTHQDRRLAEEIRIAADELVSRLRPDQEATA |
| Ga0207925_101162 | Ga0207925_1011621 | F069793 | PPVLVIATGVGIAVSQLLFEAQPVKRLFNVPQYILSVAVAAASAALLVDLLQRYDLFGGELETGVFRPALAVVWVLAMAAFFIVNHSLVSTVVSLSTGQGFVQSWLRAAPVAAADWAASIAYGLIIAALLVHDQALLPLLVVPIGLTFLGNRAWARSLAQGQRMHSLYAAGRALSNRLG |
| Ga0207925_101270 | Ga0207925_1012702 | F008776 | MKIYLEDEETLEDDVNYGIADCRKRLRSRRSTLRAQHHPPKECSNGEVSPAAGRVGSYAEVLAVSMSQSSLSRLVECLLEPASTNTPSQEESKEREEAGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |