Sample 3300026672

Basic Information
IMG/M Taxon OID	3300026672 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0055313 \| Ga0208214
Sample Name	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1102 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026672 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053063 | Gp0055313 | Ga0208214

Sample Name

Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1102 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	9882279
Sequencing Scaffolds	28
Novel Protein Genes	31
Associated Families	31

Dataset Contents

Total Genome Size

9882279

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
Not Available	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium

All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

grassland biome → land → fertilized soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Nunn, Colorado, USA
Coordinates	Lat. (^o)	40.81667	Long. (^o)	-104.76667	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Nunn, Colorado, USA

Coordinates

Lat. (^o)

40.81667

Long. (^o)

-104.76667

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000367	Metagenome / Metatranscriptome	1226	Y
F005411	Metagenome / Metatranscriptome	401	Y
F005860	Metagenome / Metatranscriptome	388	Y
F006607	Metagenome / Metatranscriptome	369	Y
F008549	Metagenome / Metatranscriptome	331	Y
F009235	Metagenome / Metatranscriptome	321	Y
F009423	Metagenome / Metatranscriptome	318	Y
F010941	Metagenome	297	Y
F011094	Metagenome	295	Y
F014615	Metagenome / Metatranscriptome	261	Y
F016546	Metagenome / Metatranscriptome	246	Y
F017450	Metagenome / Metatranscriptome	240	Y
F020332	Metagenome	224	Y
F020991	Metagenome	221	Y
F021256	Metagenome	219	N
F021390	Metagenome / Metatranscriptome	219	N
F028550	Metagenome / Metatranscriptome	191	Y
F033345	Metagenome / Metatranscriptome	177	Y
F034981	Metagenome / Metatranscriptome	173	Y
F040714	Metagenome / Metatranscriptome	161	Y
F052034	Metagenome / Metatranscriptome	143	Y
F053848	Metagenome / Metatranscriptome	140	Y
F058773	Metagenome / Metatranscriptome	134	Y
F060776	Metagenome / Metatranscriptome	132	N
F063062	Metagenome / Metatranscriptome	130	Y
F065500	Metagenome	127	N
F067909	Metagenome	125	Y
F092685	Metagenome / Metatranscriptome	107	N
F095733	Metagenome / Metatranscriptome	105	Y
F097997	Metagenome / Metatranscriptome	104	Y
F100024	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208214_100077	All Organisms → cellular organisms → Bacteria	2168	Open in IMG/M
Ga0208214_100105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2057	Open in IMG/M
Ga0208214_100118	Not Available	2010	Open in IMG/M
Ga0208214_100207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1733	Open in IMG/M
Ga0208214_100597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1318	Open in IMG/M
Ga0208214_100882	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
Ga0208214_101163	Not Available	1031	Open in IMG/M
Ga0208214_101166	Not Available	1030	Open in IMG/M
Ga0208214_101795	Not Available	866	Open in IMG/M
Ga0208214_102043	Not Available	820	Open in IMG/M
Ga0208214_102107	Not Available	808	Open in IMG/M
Ga0208214_102322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	775	Open in IMG/M
Ga0208214_102421	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
Ga0208214_102567	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
Ga0208214_102708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	718	Open in IMG/M
Ga0208214_102765	Not Available	710	Open in IMG/M
Ga0208214_102808	Not Available	705	Open in IMG/M
Ga0208214_102982	Not Available	680	Open in IMG/M
Ga0208214_103056	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
Ga0208214_103134	Not Available	663	Open in IMG/M
Ga0208214_103302	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	643	Open in IMG/M
Ga0208214_103625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	615	Open in IMG/M
Ga0208214_103807	Not Available	599	Open in IMG/M
Ga0208214_103850	Not Available	595	Open in IMG/M
Ga0208214_104138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
Ga0208214_104327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
Ga0208214_104433	Not Available	546	Open in IMG/M
Ga0208214_105018	Not Available	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208214_100077	Ga0208214_1000772	F021256	MSDVWHPLDPQGSRPQEPSGQDHGPDPEPIVRTVRVAFLLAGMVVAVMVNAGLNGLGGPSAPALPITGTAVTAVVAVAMLAVLGGAWLALRPARLLVAGKRALDHPDPRLRRPRAERARAIGFRGLAMGWASQALVFGLLPAFAGLVLELLYDRQWQLLTFAGVSLLAGFVFQLQVAGAVRLAVDDPDLRASYGSR
Ga0208214_100105	Ga0208214_1001051	F040714	VKGLLVVLTGFVLLPGSVYMLLAANFGALKGYLIAATAFFGFLIMLSAVWLFGIPGTTPLTGPKGTQPTFNFFTLNDPQAGTYDSVRDFQGDTGNGWQAAPAGEVQPGSPQETLKADLDTARQKAVQDLITQTNKNV
Ga0208214_100118	Ga0208214_1001183	F011094	MAERLPRPDRVEGRALSPRAFRPFGIEAVVLGPPAPQEGLVRREGVAVWRRMAEHGPVFDRLAATATVDPDGLLPVRVVVAATAARDRAMRVPAMGERATRVQAVAEHPPAAGWLLLVDEGPGEIWLYLAEEDHPAAVLEGFLGRRGRTDFARARRRSGIGSLASLGLLAGLFLVIYGGAAGLGPPGQALGGGMILAALAALVAARPR
Ga0208214_100207	Ga0208214_1002073	F009423	TGKAAMARFHELEGFVIVAGWGVLFLFGVGLFITRRDANRVYWALLTVLQVLLVIQLLAGLVLFAEGGRPAILHYLYGAVFPALVIGVCHLFTRGLEKPPYHLFFTIGAFFVFGLTARALMTGLGIG
Ga0208214_100597	Ga0208214_1005971	F092685	VPAHVLVLDAAEGIGPWARDALAHAGLACALVKENVEALRSVDAQWPALVVVPLDEVERWAPVLGRLSDGPTTVPVLGMASRDASVDVTPALALG
Ga0208214_100882	Ga0208214_1008821	F020991	MTSSPPGSGPLHPEVRRRVSLAVRAGEAVADPADAPAAVELARLAQRRIQDRALPSALRISGGMVLVWLILVVVPVTISTGLHLAAIAAGLGIGLLLFSVIVLLGRRQLRLARQAEQRNLRLLEQGRP
Ga0208214_101163	Ga0208214_1011632	F017450	MPTEKDPTQEIQTQVLDGIRKSQEAVIDGMRAWTETIQQLVPGTGQSALPRTDQLPSPAEVVDSVFDFAAQLLNAQRELAHSVLGATTAIGERAQEETEKAAGTAKKSTKR
Ga0208214_101166	Ga0208214_1011661	F053848	MDVRLTNVYVADARLVAEGLVQPEDAMAVFVGRAGKGRVAPFVVRRSYTGAGGWYREAMAVLAPNGDVVWRSPERPLTLRGSSKIDTFTDEVHGVAVDSADDHELVLLVGGDEVGRVPVAVLDEDPPWSSGTETDVLDEALKKSTVVWVEVPGEGGTDGRAVPVWYGTLD
Ga0208214_101757	Ga0208214_1017571	F067909	AAPLDRDRVRFRTLLFRYLAVGFILLATVLVANPGAPTAPGDPDPWDYQREQVDVQGRGVLNAYGRMSIRATAWLAKSSIERQRDMLRLSLFDALIGPGAAQSVGGWRARNANLLEAATKAALLGLIAWGVIRRPAWRNLTVAALLLIVATVTITRPYSTVSAATRPGVVVPNAMLTMVTRIAPDGAAGDQGDAVPTQRRLLTGYWRSFVAHPLSRMQTGTTVLAEAEPGKKASVLDALRRNVSAVNDWAVGHRGPERAFIATSALGYVLPFAVGLGALAMVAACAQTIL
Ga0208214_101795	Ga0208214_1017951	F021390	REEVDCVDVQIPGMQDIQKGSEVKVRKPGQGERGVWRVVGEVANSGPEDPAYDLTNVVSGRRRIFRASRLTVVRAARPGRR
Ga0208214_102043	Ga0208214_1020431	F005411	PDLPERVELVRAALPDADRARFERDLDQALDSARLTRDLGPLGHVVEAWYRVVFVRQHGGGRWAATEARLRQAEELEWESEPLEVEAAISRYLS
Ga0208214_102107	Ga0208214_1021072	F009235	MAEQRTFRALGGVDQGSLPPAGEVADALRAEFDRVFALKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRFAIRLRLLSPAQVRALWAEAMGRGLYDGWDGGQSAYAVGLGGAQGAPRLPRSQAP
Ga0208214_102322	Ga0208214_1023221	F020332	GVHASVAEAVAAFVDYQPDEHVPDPERHQRYTDAYRRYRDVYYALKPVFERLDEQAPATT
Ga0208214_102421	Ga0208214_1024212	F028550	AAQQGPDHLHVDLSLVGCGTLQATGFKLPESAKLELRFVNAATGATLHSSTVTSSAEGTMALKAKVPLTGVSTVRMTVTQPGAAKPFAFSELTIPGACPLPFTGPARAPALAGLALGLLAAGGLLVGVTAYRGRHATRVRTS
Ga0208214_102567	Ga0208214_1025671	F033345	CTREPAAPPSHRLEGTYIVHGVFSHQNFGSPCWSADAGYPDITPGTVVRVRDDATRAVVGTAELRGGALRDGPLRGNDDDCVFSFSLIVPDRDAYRIEVGRQPGQALFSRVDLEKSGWKADLTIGAYTMFGGI
Ga0208214_102708	Ga0208214_1027081	F095733	LADKLFPVVPDTGTLKAARLATEVTGNPGRWVRLDCRHLRHVQQPVEPGQLLECPTCPPTVAGGLPGRRVLGRSAERRRRAWLDAGPQAPGKAGAFAAEAV
Ga0208214_102765	Ga0208214_1027651	F010941	MEEMLDTISRHRLYGLAAEIRAVEEGHNARVLPDGSILVKAESNPGSYRVFIRRVADGVLWFACTCRSGQYRTSLPVPCKHAALAARRLEREGLARWEDGGWRLRERAQVRGARLLLART
Ga0208214_102808	Ga0208214_1028081	F014615	IVIDRLRVTPWTALTGPKGDVRLGDVCPEPAHIGTKLRDLGPIAASVPAAAVGGGQDGRQAFVVDRREVPT
Ga0208214_102905	Ga0208214_1029052	F060776	MQAEGDVAKGEGQGEVVVLPERFAVSPGHGRFYPVTPSRFNDERPYVEPGDLLGEVRNGAASIPVRSPFRGWVMAHLAWEGELVTPGQILLSLRPF
Ga0208214_102982	Ga0208214_1029821	F016546	GATQRPSDQDKRSRGVWKLRRFTASRRPATPQPQVAAAGGASVGADPDRLGQSIESLTAALGGQPTKLFERDLPQIAASEIAKRVRADVIVVLLDNGQGIMEVSGSVGLTADERQLSVEYSGDAMRELFRAGVGLIEDTDRVRGALAGIPGSRAETLVMVPLVHERLGFGVLMAGRNRSQTGVPTEVFSDAEVEALMGFADAAAASLRTAVLLRHLKGQLKALEED
Ga0208214_103056	Ga0208214_1030561	F097997	MRLRRIVAVLGLAAALSLPAAASAESKRHIGLHDMTCTSIMAMGKGLAPNAAMQLTLTNRDNGTTLAGQTVRTSAEGAFMAKLPARLNKVLSIRLTVSR
Ga0208214_103077	Ga0208214_1030771	F065500	PAHVDLFLAKAARALAGRDGETLTRWDVLRQRFPLGPRGYATSEVDAFLVRLAAQFPDPDPAAQQEILRKLQER
Ga0208214_103134	Ga0208214_1031341	F063062	MEDKVAKLSERAPEEARKLMKRVAFGVLSAVMVLLARKLVDKLWERATGELPPT
Ga0208214_103302	Ga0208214_1033022	F008549	VSPRPGDILVLHTPDGLRFRLVKGVPEGDEAEVLAAAIDRVEAWDKSQEQGPWVTNVRPGIGVRAYEAGTRWGASLR
Ga0208214_103625	Ga0208214_1036251	F052034	VAIKGKSKRSQGRPVRRPATGPRIHTVERRLPWYRAPAFPVTLAVIALLGTLVAAQNRVQEGWARDDVRRFTAQLRAQTDQLPSVIGTGTKDLPGFPSAQELTTGKLEPRKLAVRASGWSAKLGQIQSRVQEITVGEPPAE
Ga0208214_103807	Ga0208214_1038071	F005860	MAERLGCTSEAMPVSIEPPPPSAEQLADWQVLIERIRQGDRSQLLAWDEAEAVGTAAAYHVLITQLVHQRLRGAPPPLVGSVAGIIAVLRVDPTEASMIFRRRRLGDAGWTVSFGPAQGLLTYWVLPAEQIVVLLDLTWAE
Ga0208214_103850	Ga0208214_1038502	F058773	VSLVRPKDEGEHWVQLVLLTMAIWVAMFVTMAVIPSFWLYFADGTLKWTGKFTVPYGLGELVLPMQAVRDVIVVLWYGVALTGFGLAVRAYNKR
Ga0208214_104138	Ga0208214_1041382	F100024	GPVKNRERSMELIWLVLTLVVVDLAAFLFAVDTRPGLQHTSRWHPGRRTLTG
Ga0208214_104327	Ga0208214_1043271	F000367	VGTWHDPDLGRPIAAPLEQCAELLGVDLATVCELAANIEPYLHADGTRIWSLMQLERQLRPEAYRRRRGGYLDRRRIPTGDA
Ga0208214_104433	Ga0208214_1044331	F034981	MVIHYPPAQLRRNSDQPTAITNVLVATSGSSHRTGDIPLGTPTCSART
Ga0208214_105018	Ga0208214_1050181	F006607	SAEVIAMTQPQDWPFDQPAEGTLRPWYLTATGYLEALFSDPEEAQRAQRGLLQHQIPQEELRLYASEEILRILSQLQEERSIVAKAVAALVADPDAKQRFLDNAWTGGAALWLVAPTRDRADHLVQLLADYDYSSLRYYGDHGVTDVQRDGDEHHSPAVRKSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026672: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1102 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences