NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026652

3300026652: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1117 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026652 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053063 | Gp0055110 | Ga0208713
Sample NameGrasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1117 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4944441
Sequencing Scaffolds31
Novel Protein Genes33
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
Not Available16
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. ATCC 535331
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationNunn, Colorado, USA
CoordinatesLat. (o)40.81667Long. (o)-104.76667Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005831Metagenome / Metatranscriptome389Y
F005860Metagenome / Metatranscriptome388Y
F007389Metagenome / Metatranscriptome352Y
F007499Metagenome / Metatranscriptome350Y
F009289Metagenome / Metatranscriptome320Y
F009423Metagenome / Metatranscriptome318Y
F009775Metagenome / Metatranscriptome313Y
F010501Metagenome / Metatranscriptome303Y
F010529Metagenome / Metatranscriptome302Y
F011111Metagenome / Metatranscriptome295Y
F012785Metagenome / Metatranscriptome277Y
F013868Metagenome / Metatranscriptome267Y
F013942Metagenome / Metatranscriptome267Y
F014096Metagenome / Metatranscriptome265Y
F014550Metagenome / Metatranscriptome262Y
F019681Metagenome / Metatranscriptome228Y
F024739Metagenome / Metatranscriptome204N
F028934Metagenome / Metatranscriptome190Y
F029358Metagenome / Metatranscriptome188Y
F029894Metagenome / Metatranscriptome187Y
F035119Metagenome / Metatranscriptome173Y
F040714Metagenome / Metatranscriptome161Y
F041851Metagenome / Metatranscriptome159Y
F052034Metagenome / Metatranscriptome143Y
F057653Metagenome / Metatranscriptome136N
F060689Metagenome / Metatranscriptome132Y
F064871Metagenome / Metatranscriptome128Y
F066543Metagenome126N
F076935Metagenome117N
F088446Metagenome109N
F094811Metagenome105N
F101827Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208713_100017All Organisms → cellular organisms → Bacteria2502Open in IMG/M
Ga0208713_100033All Organisms → cellular organisms → Bacteria2005Open in IMG/M
Ga0208713_100034Not Available1989Open in IMG/M
Ga0208713_100039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1895Open in IMG/M
Ga0208713_100151All Organisms → cellular organisms → Bacteria1384Open in IMG/M
Ga0208713_100153Not Available1379Open in IMG/M
Ga0208713_100199All Organisms → cellular organisms → Bacteria1272Open in IMG/M
Ga0208713_100238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae1215Open in IMG/M
Ga0208713_100281Not Available1162Open in IMG/M
Ga0208713_100343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1085Open in IMG/M
Ga0208713_100442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria994Open in IMG/M
Ga0208713_100470Not Available977Open in IMG/M
Ga0208713_100471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. ATCC 53533977Open in IMG/M
Ga0208713_100540Not Available927Open in IMG/M
Ga0208713_100659Not Available852Open in IMG/M
Ga0208713_100696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia834Open in IMG/M
Ga0208713_100843Not Available771Open in IMG/M
Ga0208713_100862Not Available763Open in IMG/M
Ga0208713_100941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium733Open in IMG/M
Ga0208713_101072Not Available691Open in IMG/M
Ga0208713_101090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium687Open in IMG/M
Ga0208713_101113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria680Open in IMG/M
Ga0208713_101214Not Available650Open in IMG/M
Ga0208713_101241All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis644Open in IMG/M
Ga0208713_101395Not Available612Open in IMG/M
Ga0208713_101516Not Available589Open in IMG/M
Ga0208713_101575Not Available579Open in IMG/M
Ga0208713_101697Not Available557Open in IMG/M
Ga0208713_101725Not Available552Open in IMG/M
Ga0208713_101749All Organisms → cellular organisms → Bacteria → Terrabacteria group547Open in IMG/M
Ga0208713_101792Not Available541Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208713_100017Ga0208713_1000173F009423MARFHELEGFVIVAGWGVLFLFGVGLFITRRDANRVYWALLTVLQVLLVIQLLAGLVLFAEGGRPAILHYLYGAVFPALVIGVCHLFTRGLEKPPYHLFFTIGAFFMLGLTARALMTGLGLG
Ga0208713_100033Ga0208713_1000332F013942MPDAVEFLLYLAAFACFLLAAVSVRARWAGRVNLIGLGLACWVFIPLVAALRRVS
Ga0208713_100034Ga0208713_1000343F009775MDPKEACVRILDEAGDETLHWTVVLDRALTQRLIDPFTTPDVRGVVVKSLAALAKEGRVVKQGTGLYRAREG
Ga0208713_100039Ga0208713_1000392F066543VPWPVFLHGGPGVEVLVGGRLWVLRLLLGLPAGVDVGLQGLVETVANGLELDLDDWLPRALAAAFLDPLVALGVADIHPPPPHPGASLRLGPRASTVIGSALVAAGEEVSLTSTPAN
Ga0208713_100151Ga0208713_1001512F035119MAYDIDPDQSASIVAIFLFIDAAFLGFPVVSTMLNGGAFPVVALVLVAGLIAAGVGLLQGRRWGWYLAMVVVGLSVLLDLLRGNLLALVIDALIIFLLTRPATRAKFGVR
Ga0208713_100153Ga0208713_1001532F029358VRVFVVVLIGLVVVLAVLTEVCLLQAAAMRRQVRAVMPPDDEREEGR
Ga0208713_100199Ga0208713_1001993F014550VRSLAPREVALPLWLAILLGTFWLAVLVTVAFTVWRMVANLKALTSSVQALSERLTPALEELSAASQEAADHAARLSERGASAAEQR
Ga0208713_100238Ga0208713_1002382F029894MMRGQVVPEEARAWTAGLLLATDYFAHARREAVAKASAAIRSRLHRARRVSSEDPGTSR
Ga0208713_100281Ga0208713_1002813F010501MDAGSGMAPGTARRRLGNFRTAELASRVRAVLAEAGIPSSGKPDPDRPEWWGRLLDRLVSLAGVGGHRVWVPRERAREASRILAAARRRQD
Ga0208713_100343Ga0208713_1003431F007499MYDVLVFDHRLAEHRPLDSKAELARLLFGYTTGNGQRFPAQPELVRFVARPGGEGAIQDAMTGRDAIALVESGEVINFVYRAEGRRTEGSLARIGNGELRVR
Ga0208713_100369Ga0208713_1003692F076935VEAQVQLSTAMRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVVGELADLNDQLRAR
Ga0208713_100442Ga0208713_1004422F009289MPEPNEDLSPTDRELLRRAELALTQLNNRHGLEPDQSATLTAIRLRLEGKSRASLDDLLTAGKDLGGKDPLTEAMARGQQGPSFDDLVAGAEKKPKKSLDDLL
Ga0208713_100470Ga0208713_1004702F057653LAVRARRGRWQVRAMAEMWLGVLLILGIDLVLVGLVCAIVFVATTGLGGWQDRRQARRFAEAAARGDFEEAETVVRAASHQAGRTNLAV
Ga0208713_100471Ga0208713_1004711F005831DHQGDTTHNWDTADPATIREIEELFREAQATGRLVYRKTNHGSGEQVRLASWNPEQDTELFVAPRLAGG
Ga0208713_100540Ga0208713_1005402F013868MTGLSAAGLADLAGVTEGEVERLADLGILAARDGTGPFLEADVPKVRLAVACERAGLPMEGIASAVRAGRLSFAFLEGTPFRRWAFRSGRTYRQVSQDTGIPLETLGAVLEQMGFARV
Ga0208713_100659Ga0208713_1006591F060689MPADRGMSPGLLQQLTVAILDGSADDGQRIITTIRSYLDTWEIFLQDRRQLRDHLLTVHHAGSSCLEANSASLNRQHWEAHSSDLTSFLDAHP
Ga0208713_100696Ga0208713_1006962F052034VAIKGKSKRSQGRPVRRPATGPRIHTVERRLPWYRATAFPVTLAVIALIGTLVAAQNRVQEGWTRDDVRRFTADLRAQTDQLPSVIGTGTRELPGFPSAQELTTGKLTPKQLAVRASGWSAKLGQIQSRVQEITVGEPPAEAGTDGEPSNAVGGRDPMLTSVRDSYAAAIGVYFEAANIFQKAGEAPAGSPSARALVEQGMATTSAAGKAMD
Ga0208713_100843Ga0208713_1008431F019681MADAGATPEGRPWAVAGLVLAGLGLAMFPIGGLVGVVCGGIARSKGDGSLGLAAIVASVISFFASFVVAALVLN
Ga0208713_100862Ga0208713_1008621F064871MHDYMLQQLAADRVAELRADAQRVRHQRVRRAQRASEASEARIDREWRMLVHALRER
Ga0208713_100941Ga0208713_1009412F007389MRVGLLAAVAVAVVLFALGRGDVVVALLLGGLILATGRAVFRGYNTTKGPTGPPVDVEEDGTLLVFACETCGEQLVLLRRGTDVPPRHCAEKMVLRRIPAPSTDPDPRVN
Ga0208713_101072Ga0208713_1010721F005860MSIQPPPPSAEQLASWRALMKRIRQGDRSQVLAWDEGTGAKSQGTYQVLVTQQLHRRLRGAPPLLAGSVAGIVAVLRVDPTEASMIFRRRGLGDSGWTVTFGAAQGMLTYWVLQPERIVVLLDLAWAA
Ga0208713_101090Ga0208713_1010902F040714VKGLLVVLTGFVLLPGSVYMLLASNFGALKGYLIAGSAFFGFLTMLSAVWLFGIPGTTPLTGPKGTQPTFKFFTLQDPAAGKYDSVRNFQGGAGNGWQEAPAAEGAQGGAQETLRADLDVAKQTALSKLINDTNKGNKDSSKDLDVTNLDAKAFYTIQNGTEVAAIVISPKQPPAGSGL
Ga0208713_101097Ga0208713_1010971F094811MFADADHEVIDSPEALFRHLYEEHGVEEARDLDLETAPLQFWLR
Ga0208713_101113Ga0208713_1011132F013942MPDTLEFILYLGAFLCFLLAAFSVRAAWASRVNLIGLGLAFWVFIPLVNALRRIT
Ga0208713_101214Ga0208713_1012141F014096RPVLLGVLWIAVVALALAGCAKGKAEGTAASPAGLPVYKASVQKFKYSGMPASIKAGESIITLTNRESGEITHEFVLLALPSGKSVSDIAADAKKKGADAEEDFLSFGEVADVNTGSTHAGVFSLPPGTYALACFEDGKIGGGKGPVHATIGMTHQFTVT
Ga0208713_101241Ga0208713_1012411F088446LNRGESPDHTYRDQSALVPLARTSAGRTADALERRFDRLGFGVPRCTPFGCDEQRASALRTFAFGMLETVLGYNGGQLERRAYADAVAGLALSVQIGDDGVVRAADRVAYRPALRGGFLSYWNRDRRYLKPGGVAQAVADRFNMPPEYVGLRPTDSETGFDAYAFLALYRCARYKVGCKLVGPARP
Ga0208713_101395Ga0208713_1013951F028934LIISMIILTVGRDRSGAVWTDGAGKVSRLDPSGAVQADAEHPTPNRKV
Ga0208713_101516Ga0208713_1015161F041851YAEDQTYAGRPGAVVFEYQAVRDGRRVHVRHVNVKGRRWGYNVEFIAPAGDWDASRTLARQFEQAFQPLG
Ga0208713_101575Ga0208713_1015752F010529MDDHTGRLTIIASSTMVHHRIKCMICGRPVDHRVVFMTNDARVLHAGCVPDHVKVPIAVLLQAIRRLERMVERSRTNDRYDPDPATALDPDPQ
Ga0208713_101697Ga0208713_1016971F011111MNVELAIAALGCLVLALGHTTIGLRWVLPNLTKGSLPSTPFGSPSMTLGMVRFTWHVVSVLLLGFGILLMALAWAPGADPKTLLLRWFAVLWFAATALACWNARRRPRSLLRLPVPLVFVVIAVLCWTAST
Ga0208713_101725Ga0208713_1017251F012785MVIHYQPERLRRNSDQPTAITNVLVATSGSSHRTGEIPLGTPTCSARSRHGRWALYPSGEEVVVVWPGGAVVGPAVEVAGELDRLGSSQ
Ga0208713_101749Ga0208713_1017491F024739MWEYAIREYVQEWGEPTEDRSMGSFLEELNRLGEDGWEAVGITPRTHYDRGGGPGGWDSFTFVVLLKRLRPADDMMPRS
Ga0208713_101792Ga0208713_1017921F101827KGKRYEATAWVLASRPGVEVQVNLLELRGGKRFAVDTVGAVARAGGWQRLEVSHNAHRPGATLAVEILAPTLAGQTSLLVDDLAVRATSASMSIH
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