NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026392

3300026392: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300026392 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114432 | Gp0238655 | Ga0213908
Sample NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59152766
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae2
Not Available12

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F000817Metagenome / Metatranscriptome879Y
F007777Metagenome / Metatranscriptome345Y
F016001Metagenome / Metatranscriptome250Y
F020183Metagenome / Metatranscriptome225Y
F023352Metagenome / Metatranscriptome210Y
F024104Metagenome / Metatranscriptome207Y
F026908Metagenome / Metatranscriptome196Y
F030638Metagenome / Metatranscriptome184Y
F040271Metagenome / Metatranscriptome162N
F053640Metagenome / Metatranscriptome141Y
F054254Metagenome / Metatranscriptome140Y
F055474Metagenome / Metatranscriptome138Y
F061584Metagenome / Metatranscriptome131Y
F062778Metagenome / Metatranscriptome130Y
F096734Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0213908_100482All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales3854Open in IMG/M
Ga0213908_102916All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae2048Open in IMG/M
Ga0213908_103209All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae1956Open in IMG/M
Ga0213908_114166Not Available939Open in IMG/M
Ga0213908_117226Not Available840Open in IMG/M
Ga0213908_118715Not Available798Open in IMG/M
Ga0213908_118937Not Available793Open in IMG/M
Ga0213908_120794All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales750Open in IMG/M
Ga0213908_121699Not Available730Open in IMG/M
Ga0213908_130443Not Available595Open in IMG/M
Ga0213908_131723Not Available579Open in IMG/M
Ga0213908_132423Not Available572Open in IMG/M
Ga0213908_132435Not Available572Open in IMG/M
Ga0213908_139437Not Available507Open in IMG/M
Ga0213908_140374Not Available500Open in IMG/M
Ga0213908_140448Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0213908_100482Ga0213908_1004822F020183MTLSINAKTYTGNLYSPTSVVYNGPIKTASIKDDVRLGQTAPKPTDVFSGLGRTQAKLTRTLTLTGALTTTGDAILTIDVAIPVGFASADVDTLLNDMGAFLASASFKTHVKTPQVAF
Ga0213908_102916Ga0213908_1029162F030638MAAAAALTLKNNAAANVTFDVYSVNPDSVEWIESGATSILGTSRAVLSRKIPTDKASGVYRIGGKLTRPVVNATTGALDGTVTGTFEILRPAKLTVSEVDEMVARFKELVSQAIVKTAAESGAIPT
Ga0213908_103209Ga0213908_1032093F030638MAAAADLTLKNNAAANVTFNVYSVESDAVEWTESGATSILGTSRFRMSRKVPSDKANGVYRVNGKLTRPVVNGTTGALDGTITMNFEILRPAKLTVSEVDEAVARFKEAVGQAIVKTAAESGAIPT
Ga0213908_114166Ga0213908_1141661F016001VWESAIATTVFSRRLDPIPSWAFLLQVFAPDAVETPSRLLTPVAFSATLSSHCRRRPSAFRHRAWLASLEAAYLLEVLHLPAIPSCPEISDEVRHSVSPNPCGPGSTF
Ga0213908_117226Ga0213908_1172262F061584VASHEVGRSTECCERRSCKRIGLLAPTMTSLFPVSLCGVTPPPAPVLLRVRVHPPMSFTSPTEYELLQPCPACCHTKRLPWGFVPHRGTSTQSPLPSELPMSRPTVPSSAFLAPSTVCSSVCLAGLFHPAATSGIHLPGVISRCLAASPRRRPVPS
Ga0213908_118715Ga0213908_1187151F023352MRPKHPHAAESGVGKHTARESEAPNGVPSGKSAWR
Ga0213908_118937Ga0213908_1189371F026908LTWFVSRWRNHQPKRAEKPHSITRWTRKNGTLSGPATRPKTPLAVENSVGKLAAPEMRRPMSARERELGEL
Ga0213908_120794Ga0213908_1207942F020183MALTFNSKTYTADTFAQNTVGYYGAAQTVTVKDNLLLGRTAPKASAVYSGTGRTQAKLTRTLTLTGALTPTGDSIVDLQVNIPVGAASADVDALLND
Ga0213908_121699Ga0213908_1216992F000734VKTFQNVGDVKNGTAGLRTKSNLRVKRRDPWHRANAPSKAVADLALSGEDVEENS
Ga0213908_121699Ga0213908_1216993F000817VRSKLKVSWIIPGDWGKVESGWLAWPLLIRIVRFGSGGRIHQFL
Ga0213908_130443Ga0213908_1304431F053640SKRSGLKDVAESTAGIIPGDRGKVGDNWCRPPLQWRKSGARHLSPVPLAGVVSGQSTHELGTELQGAIRNRVEQSQAGGKFRTACRRSHPRGFWLLLRRPERSHGSGGTTPPKGPARLHEQGAQRSRGGGELTDLGKVREIPQWGGVKKHVAPLQKRTQPKR
Ga0213908_131723Ga0213908_1317231F024104VPVRPFGSTTAFRIAPVAAASLPEARCTSTPRFGLPRPRSPLPSGTFTSLGIKAFNRVCCLPVRLTNPPDFLSLPAARSNESLGCGSSFQVRYVSAGLLF
Ga0213908_132423Ga0213908_1324231F040271MQALPDLSRQFETAFRSPPTAARYRATIERSKLPACFFTALQSLASNPFGLLLLRPGSVCPSRGAIYVSDPLSNAGLCIFDWSPGLRSPSGFLGPSGSKRSARLPTDKLPLVLGPISLRSPPTFRFISSPTDQRSRSATAHQVC
Ga0213908_132435Ga0213908_1324351F007777VRPVLEAVERKAASRSGLLPEMEADAHLRTDPQLAKTSGGEQGAHVSPDPDATFRLRMPVGEQTAGGSL
Ga0213908_139437Ga0213908_1394371F055474MPFQIKAFSRLGYPLAHLRRSPDFPSLPAARLQINDDGHGSMFQVRYVLRGSLS
Ga0213908_140374Ga0213908_1403741F062778GIFFAPRRSFCRTTDQRSKARLQTIPNRLRLLETAFHFLPTTTRYRVTIERSEFLACFFAALLNFVLDPFGLLLLRRNLVSPSDGEISATSPLPGSQFSSFAWRSNLRSLLGFLGPFRSKRSIQPPCEKLTFVFGPISLRSPPAFHFISLPTDQRSRSATAHQVYC
Ga0213908_140448Ga0213908_1404481F096734LQVARSSFAPRSAATILFITQRYGSSFQIRYFLPGSL
Ga0213908_140448Ga0213908_1404482F054254LTQLRGSVARPVLGAVERKAASRNELLPEWRADAHLRTDPRLAKTSSGEQ
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