| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026368 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0293668 | Ga0255361 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 121701487 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → peatland → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020297 | Metagenome / Metatranscriptome | 224 | Y |
| F032246 | Metagenome / Metatranscriptome | 180 | Y |
| F038045 | Metagenome | 166 | N |
| F041086 | Metagenome / Metatranscriptome | 160 | Y |
| F048717 | Metagenome / Metatranscriptome | 147 | Y |
| F056752 | Metagenome / Metatranscriptome | 137 | Y |
| F062367 | Metagenome | 130 | Y |
| F081380 | Metagenome / Metatranscriptome | 114 | Y |
| F104110 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0255361_1001130 | Not Available | 3607 | Open in IMG/M |
| Ga0255361_1021742 | Not Available | 731 | Open in IMG/M |
| Ga0255361_1027311 | Not Available | 654 | Open in IMG/M |
| Ga0255361_1030958 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 | 616 | Open in IMG/M |
| Ga0255361_1032667 | Not Available | 600 | Open in IMG/M |
| Ga0255361_1035690 | Not Available | 575 | Open in IMG/M |
| Ga0255361_1043993 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 522 | Open in IMG/M |
| Ga0255361_1045183 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1 | 516 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0255361_1001130 | Ga0255361_10011304 | F038045 | MIGFTPAEFNQVREAIAAAHLYCQAISPLLKARHTMMNKDQRQLAQLAPQAVAEGFNTIALITHRENRDPDAVDARPAIKLQDIDTEAMRDELENVSALVLPDLVYQMVCALGELPMYHELITAEPLTTHRAAILMAWTFEAGRRYGLQQALAIIDTTTTEFKTGTDAVLTAALNATLDLPSPELEHKPGEVIPFTYPSAEDLDRVAADEAAANATTGEPSDHKPTVN |
| Ga0255361_1003319 | Ga0255361_10033191 | F104110 | EWFMYLGKDVATGDSLELGKVSDVAISNEGDVFYLVEKGENPNKRYYFSQQDVQTSDGRVITRSASEFTDDVAKRSHFLCALYGVEVRDTTNSRLGAIDNFVASPEGALVVIEDPQGSALLGRYRDLDLTRLSKFAVLKQLPPQDSFDNYLKNVDKNKLLTKGIACDLSKVATHEGLLTRIRKKLEQSEADRIIADRALID |
| Ga0255361_1021742 | Ga0255361_10217422 | F020297 | MNFLQIIQTILSVAPSGIQLTQEVVALVQAIEAAFTASQTPATHQQAVASALGAHLAKTA |
| Ga0255361_1027311 | Ga0255361_10273113 | F062367 | GHQESTRSEAQKNSPPHSSTSNLVSKTVPTPDNGDILFDQIDSPVIPPDTNVGIQGPAVDEQWIIETIKELQKKGCAEVSPAKLKDRFLKLYHLQEPLAGVKDALANLAPQHTSDFCKWLHQLQEK |
| Ga0255361_1030958 | Ga0255361_10309581 | F056752 | LDKLGGSVGVGGTPSVNGNWRFTEWGAANEYWRYGFSGQIGNYMVRVDEMGLRFNFVGDLGATAHSSNGNRYRYQIVLPFRNGITTGAGGSAGLGSDENPDFDNAQYSISYIWHKKAMELLVPDARPLNAEMPFGHRDFGGKWQFVMDNLGADANGVAITNKRRNKGQFIADFRYYVRPLHTEFAEAIFHKREQFCIPQVSPCNP |
| Ga0255361_1032667 | Ga0255361_10326672 | F032246 | MDKVTVEIDSKWVKIARSPLYWVVAAMQGISITFAPLFLYWSGKGQFCPGSGWIIVPACYAVILLVGLFYMRLGRAVISELRKKSAPD |
| Ga0255361_1035690 | Ga0255361_10356901 | F048717 | VQTTVFSLSDGQVEFQVSAVPPWADADEFGQVAAELHRSPNGTSTLYRIPAGCSVPIHSGPGCALCQIISGRGKLVLPGGQEVDYHGPEIFIFEPGALHGWRDVVED |
| Ga0255361_1043993 | Ga0255361_10439931 | F041086 | MTPDDQSATAAGLRPETAVICAGRPSSAGSEPLNIPVVLAS |
| Ga0255361_1045183 | Ga0255361_10451831 | F081380 | FNLLVLDPIKRFPFQMNDILIGFVFMSCCIDYLSGFWWGENREIGMVRQAYVGFINEYFRPRGLYNAKGIYDSLRNGLVHLFTIKNSIYELTFDEPQRHLTVSHNGFIILNAGNFRNDLIDAANRYFNEVEKNPQLLDKAFQRYERDGFIRWVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |