NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026344

3300026344: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C5



Overview

Basic Information
IMG/M Taxon OID3300026344 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133548 | Gp0296333 | Ga0256800
Sample NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size61423343
Sequencing Scaffolds36
Novel Protein Genes38
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium2
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001965Metagenome / Metatranscriptome610Y
F003094Metagenome / Metatranscriptome508Y
F004625Metagenome / Metatranscriptome430Y
F005277Metagenome / Metatranscriptome406Y
F005759Metagenome / Metatranscriptome391Y
F005929Metagenome / Metatranscriptome386Y
F006247Metagenome / Metatranscriptome378Y
F008892Metagenome326Y
F009914Metagenome / Metatranscriptome311Y
F011453Metagenome291Y
F014394Metagenome / Metatranscriptome263Y
F016219Metagenome / Metatranscriptome249Y
F016687Metagenome / Metatranscriptome245Y
F020078Metagenome / Metatranscriptome226Y
F020200Metagenome225Y
F030231Metagenome / Metatranscriptome186N
F031150Metagenome / Metatranscriptome183N
F031548Metagenome / Metatranscriptome182Y
F035133Metagenome173Y
F037757Metagenome / Metatranscriptome167Y
F040402Metagenome / Metatranscriptome162Y
F053157Metagenome / Metatranscriptome141Y
F055831Metagenome / Metatranscriptome138Y
F061030Metagenome / Metatranscriptome132Y
F063813Metagenome / Metatranscriptome129N
F064234Metagenome / Metatranscriptome129Y
F068709Metagenome / Metatranscriptome124Y
F071793Metagenome / Metatranscriptome122Y
F077460Metagenome / Metatranscriptome117Y
F082880Metagenome / Metatranscriptome113Y
F084792Metagenome / Metatranscriptome112Y
F087939Metagenome / Metatranscriptome110Y
F092299Metagenome107Y
F093076Metagenome / Metatranscriptome106Y
F094058Metagenome / Metatranscriptome106N
F097602Metagenome / Metatranscriptome104Y
F097914Metagenome104Y
F099198Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256800_1000378All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1413Open in IMG/M
Ga0256800_1000543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1290Open in IMG/M
Ga0256800_1000643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1230Open in IMG/M
Ga0256800_1001057All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1085Open in IMG/M
Ga0256800_1001094All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1074Open in IMG/M
Ga0256800_1001197All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1048Open in IMG/M
Ga0256800_1001304All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1024Open in IMG/M
Ga0256800_1001534All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium980Open in IMG/M
Ga0256800_1001928All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium922Open in IMG/M
Ga0256800_1002023Not Available907Open in IMG/M
Ga0256800_1002060Not Available901Open in IMG/M
Ga0256800_1002404All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales859Open in IMG/M
Ga0256800_1003116Not Available798Open in IMG/M
Ga0256800_1003589Not Available765Open in IMG/M
Ga0256800_1003796All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium752Open in IMG/M
Ga0256800_1004006All Organisms → cellular organisms → Bacteria740Open in IMG/M
Ga0256800_1004585All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria710Open in IMG/M
Ga0256800_1004925All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium696Open in IMG/M
Ga0256800_1005500All Organisms → cellular organisms → Bacteria673Open in IMG/M
Ga0256800_1005611All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium669Open in IMG/M
Ga0256800_1005747Not Available664Open in IMG/M
Ga0256800_1005947All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales657Open in IMG/M
Ga0256800_1006466All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.641Open in IMG/M
Ga0256800_1007058All Organisms → cellular organisms → Bacteria624Open in IMG/M
Ga0256800_1007488Not Available613Open in IMG/M
Ga0256800_1008225Not Available597Open in IMG/M
Ga0256800_1009186All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria578Open in IMG/M
Ga0256800_1009543Not Available571Open in IMG/M
Ga0256800_1012524All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria525Open in IMG/M
Ga0256800_1012969Not Available519Open in IMG/M
Ga0256800_1013315All Organisms → cellular organisms → Bacteria515Open in IMG/M
Ga0256800_1013723All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria510Open in IMG/M
Ga0256800_1014126All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium506Open in IMG/M
Ga0256800_1014171All Organisms → cellular organisms → Bacteria505Open in IMG/M
Ga0256800_1014252All Organisms → cellular organisms → Bacteria504Open in IMG/M
Ga0256800_1014424All Organisms → cellular organisms → Bacteria502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256800_1000378Ga0256800_10003781F064234MKTDPTRPRSLREIEMEVEAEGREWTRQRLQQRLQEEADRHGEVFPPQRPAADPSAPPSDAVAHRRRGD
Ga0256800_1000543Ga0256800_10005432F001965MRLSIFKVCMGLSFLCVLPAAGFGAEKSYLCAINEVYECVAVTGCSRISLEDANLTPIMLIDVEKKQLRTAPLGGDPRTDDIDSVAVTDKAILLHGNGIKQTDRTWSAVISLETGNVTAGVSTLDSSLSLLGKCTAEP
Ga0256800_1000643Ga0256800_10006431F009914MKTEQDIAPLIELLKMAAEQWPSSENGEVSQSELFRRDQALLKMWPEACRRVGLGEREFPRGVIKRWQHEMSGGRPN
Ga0256800_1001057Ga0256800_10010572F071793MENRNSNRHKTDQSIVFTFFTSHSFNNAFDGKMKNYCACGLYAELQTRFKDGTVLLARTTSNPTERLPAKIEEGFRSISLVEVKWSKPLSSNGVVYYGTGLKHLAV
Ga0256800_1001094Ga0256800_10010942F004625MRVALKDDFRDLAEKNGWSEAFAEGYIDGKAARTQGTQTHRYPVGDLDEYRSGFLAGYSLTREKRCRGML
Ga0256800_1001094Ga0256800_10010943F005759MGTVAELKIAGNEGPTPAYINGVADGQSARAEGSSLSLYLQVGIDDYAKGFRAGFFGQMNLGKSLETS
Ga0256800_1001197Ga0256800_10011972F068709MASKNKLLVALLAVTVAAAFGLTDNASAAKKLTYEQAYAKCKSIMDKEGTPGTSTQSNVRYTRGAACMKKYGYKL
Ga0256800_1001304Ga0256800_10013041F006247MKKAGYLALLLTWTLWTRTISPTSDTWSAAPGLASQDKCLASVKDKLDMWKQFKDAKFEKNTVFFTSNNSSMSYVCLPDGEDPGKAVKAPKPVK
Ga0256800_1001534Ga0256800_10015341F082880KKLERAIALGKRVEHFFLALVGADGFPYVNSARHLEQVAEDQFAIEEWICPLTVKHLSENPKMAVLIWDPASDDGYEILGELLMFESQAFLNGFAPEMEENIYLPQVKRRLIIRAEKITAFSHALRCDEIQMLAASKAKVTYSTRDDGDGRREVPLCTFAPEWAEHARYDRSDDPCDDGRAGAV
Ga0256800_1001928Ga0256800_10019282F053157MRVDLNKTRDSLHQLNNKVAQVLAYAELMQLSLENEKEKERIKLVIKGALEARDIIAVLMTELPRSEHLTQ
Ga0256800_1002023Ga0256800_10020232F037757VQTTIRRYSPFWLSIFAGVALWEIAGRSTSAAFMVPFSETVVRLWQLITRGEFIAQFLDSTQLFLTG
Ga0256800_1002060Ga0256800_10020602F020078MRTAIRFRWQSGAIALAAIIFAFVAPGIALCKVVPLATIASAIAITTLVAGLGLYLAGRSIEKRTPQSERVDHYLQASILVTAAGLLWFHLILQTGPWRDRSIEPGTALAIVIICGIAGALLLIRRGKRLAGDRTN
Ga0256800_1002404Ga0256800_10024041F099198MADAITAAIGAVIMIGYIWLIAAKLNELPLWICTLAGLACMLWAFWEEDWNPLFSNKS
Ga0256800_1003116Ga0256800_10031161F003094MKTATKVIFASALMLSAVAPSLSYASYYVDQTKTWAVENARAQDVTDKMNRHTEGAAQMQSSTQRSGYYGTGNTSVPGIGVDKDDLSPKSR
Ga0256800_1003589Ga0256800_10035892F084792MRKLFVSAIALGFLTSPVFAQKQDDDPLVIMEKEKKQRAEELDKQYKRTLNQTRKESDAPRNDPWANMRGSNDGKR
Ga0256800_1003796Ga0256800_10037962F016687MKTLKYLSGLMIISTIALCAGSAFAWDTRWQFKQDASSNNYDSGTRDIEMQKKFDSNSMNKFKGTTDRSNGYTVMRNLNGNTMRGYIDKDGSGLLQDQNGTFYRINTRW
Ga0256800_1004006Ga0256800_10040062F063813NEEILPIIHKDALMSLVRWSQAHGQKLKPSECESKFQPLAEPSHPSKKPSDQLGSGTGSAPIDETNSIERGLS
Ga0256800_1004585Ga0256800_10045853F014394SRVIATFVAAVVWIYAGMSVASRPVAQQAITPSVLDVAATCAIAVVD
Ga0256800_1004925Ga0256800_10049252F020200MCWVCERLENLIAGWTEEREFQEQTSSDDYHRGLSKGFSECVRDLAEAVASMRLKRICEKFPVRERSLDDKQRWDILNDVLKLGDEDSNQR
Ga0256800_1005500Ga0256800_10055002F030231NIILAVLTFGLLASLGGSATAADLYPYRSYGWRSHVWYGADCCREPFGPGIRVVEQVPYCGDCDNLIGWRTSSNDIRLRYIGYLPWTRGCALGGCYGYYGVYGGCYWKEVPVADGRGDWVRGVEKICN
Ga0256800_1005611Ga0256800_10056112F077460MSVVVRPIGLLKAFCRDRLDEQDRVVLPDRNGCTLETVCQEIGLPQGLVSLFIVNGHIEENSYRLQAGDEVKCVAIIGGG
Ga0256800_1005747Ga0256800_10057471F016219MVAVTYGVARGPAAKSAERTPAAAPRKSFFTRFMNALVVSRLQHVHREIARHAHLLPRTFDEKGKLLVKTPFSDL
Ga0256800_1005947Ga0256800_10059471F087939IGLAEDVATQPLPTAKGHADSLDRPGLGIDVDENRVRRHRVGISTRNVA
Ga0256800_1006466Ga0256800_10064661F097602VTILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSTDEAIVIVKFGANEFMVTWRRVKHRISDRKLEVKGGTCKRPWPLIKDQRTEISLTGAVDYLRRKQ
Ga0256800_1007058Ga0256800_10070581F031150MAEFIIDADGHIMEDHKDIFAHIKGNFAEMNWHSTWPMFDADGWQRGLARKGKREDPD
Ga0256800_1007488Ga0256800_10074881F005929MRENMSLLSFWGLVFSLIAVTLFVVIYSHQKNKYANQKIVEDLRRRSVGVYLAANTPEAASDSKKFREASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF
Ga0256800_1008225Ga0256800_10082251F005277QAELEKAKSTKEFFKDAYWKCLATEIVRVVPTSMSVQEFSVLVKRACPKERNDFFTSLSNYIVMLQPDVDRSTVAPAANIAVLDAQKDAVQALIDLRSGKRKL
Ga0256800_1009186Ga0256800_10091862F055831MQAIADLKALVLEMLGGAFQGGDVQATQQMGVNMTNAVKREGVVIIQNQNVEVYARIMPSMVKMLKLCDSLESNWRSQAVIEIAPQQNQLPAPADDANTDPIERCCSWLFENH
Ga0256800_1009543Ga0256800_10095432F011453MRIRFAVTTAIVAGAGVLSACTGNRSEQDARRDFQRSVADYEYCVAANQMSTCESERRIMKAKKRVLSATMQRLSR
Ga0256800_1009761Ga0256800_10097611F092299IRTTIDLSAKPVEVYAYVVEPATGPMVAHARDVVEVTKDDARVSGFTTKRGTVKYVTQAPPHLLEGEYQQKRARTRYDIRLEAISDTRTRVSIDVNIQPQGLRTKLQGPLPRLRVKGQLNDWLEQVQQHFEVKQK
Ga0256800_1012524Ga0256800_10125241F031548VKTNIMKIFAIATLMIFIGAGVSMADGWKGNGGNRGHAYGHYRQMEYHHYYAPRPVYVERQYYPVVVERHIYHPPVVYQAPMPNGYFFGMSVMEPGIGFSFGVNGR
Ga0256800_1012969Ga0256800_10129691F035133MANIFTDWTSRAAVAARIAEEQQNPVESWNELVAPEDYDLSFDRNEYQIRPAKWPWLVHI
Ga0256800_1013315Ga0256800_10133151F093076NYLWAAYIVVWVIHCGYILTLVSRSKRLERERKELGRN
Ga0256800_1013723Ga0256800_10137232F040402MTKNIIRVNSAVAAAVAILISACSTTHLGWLRISPDVNRAFETLHVSPDYRYWYLYLENTPYAVLGLSREYRFEDIQWTEVEPGSEVFQKVVGLVQDFPVPGSRTYGAYIVNEKGDQIGVWYSSMGAGITIDPDAKVVFI
Ga0256800_1014126Ga0256800_10141261F097914TGDVANGYLTLQQGSLPAVALTPPYSILAKRQGFRDVIKTSDVIPVSPTTGLVTTKEKLEKETAKVRRVIRAVFRAVDFARNRRADMVQFIVKQYKMEKDVSESVYDAIMETLNPTLSLTDQEIQIELNRIAEQTKMKVTAKPAELVDFTLTRQVGAELGR
Ga0256800_1014171Ga0256800_10141712F061030CKDVYDKVACGCALQNGGRIIPPPVGVKREGLKLRPREGQEPTQTLDGGRVAFPKYFRREGFKVHRSRALEGYVACMHSNGRK
Ga0256800_1014252Ga0256800_10142521F008892MAQDEKIKEAQEILNWAIANVNGSIKCKVLDHKYGDYHVQFFNKENKLIMPTQIPEGWVRGSNPKQNLIHDNLKMLLRNLENYQ
Ga0256800_1014424Ga0256800_10144242F094058MQILLNIIFYAFLAWLFYDSTVVEHDPWFAFVVGFVIVVAIIVQLMPGLHASKVSPGEFPYDTIGD
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