| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026247 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110167 | Gp0085223 | Ga0209133 |
| Sample Name | Upper troposphere microbial communities - SEAC4RS-RF6-003 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 20243295 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331 | 1 |
| Not Available | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei |
| Type | Environmental |
| Taxonomy | Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Aerosol (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA and various oceans | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007965 | Metagenome / Metatranscriptome | 341 | Y |
| F050360 | Metagenome / Metatranscriptome | 145 | Y |
| F051872 | Metagenome / Metatranscriptome | 143 | N |
| F054846 | Metagenome / Metatranscriptome | 139 | N |
| F058997 | Metagenome / Metatranscriptome | 134 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209133_100691 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331 | 682 | Open in IMG/M |
| Ga0209133_101150 | Not Available | 583 | Open in IMG/M |
| Ga0209133_101161 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 582 | Open in IMG/M |
| Ga0209133_101693 | Not Available | 521 | Open in IMG/M |
| Ga0209133_101793 | Not Available | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209133_100691 | Ga0209133_1006913 | F058997 | ERIMIIYKDQQMTVREAFKLMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG |
| Ga0209133_101150 | Ga0209133_1011502 | F054846 | SRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYNGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL |
| Ga0209133_101161 | Ga0209133_1011612 | F007965 | MKKKKETRGGKRSFSGRKKSPYETKTIAFRVRVEFIEPIKKMVKDYVSERLQGDA |
| Ga0209133_101693 | Ga0209133_1016931 | F050360 | TEQVVHNNMLREIEGMSYGGDVQDDVSDWTDVNTYLPEFSRMVWAACPNAVLCYHQTFLLYMDSDCQWRDNRGYLFSGKVNFWQYADVPECNVSC |
| Ga0209133_101793 | Ga0209133_1017931 | F051872 | DFDAIDALLAERDKLMKAEPVAKQEEPLAIDDTNDDGETQEQLQAAAQKWIADNPWYNKLTQAGRDQAAKLEAEYRAKVDCTTEEALAYVAQEMGKDPIVEVLKGKLKSPDVTPRTAERPRVASASESSLDPASRNIYNKMISQGLLKTAAEKNAFIKDALGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |