| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026244 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110167 | Gp0085222 | Ga0209030 |
| Sample Name | Upper troposphere microbial communities - SEAC4RS-RF7-005 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 17534604 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei |
| Type | Environmental |
| Taxonomy | Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Aerosol (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA and various oceans | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043390 | Metagenome / Metatranscriptome | 156 | N |
| F045749 | Metagenome / Metatranscriptome | 152 | Y |
| F046373 | Metagenome / Metatranscriptome | 151 | Y |
| F051069 | Metagenome / Metatranscriptome | 144 | N |
| F076005 | Metagenome / Metatranscriptome | 118 | N |
| F077781 | Metagenome / Metatranscriptome | 117 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209030_100171 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1168 | Open in IMG/M |
| Ga0209030_100458 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 805 | Open in IMG/M |
| Ga0209030_100589 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 730 | Open in IMG/M |
| Ga0209030_100866 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli | 638 | Open in IMG/M |
| Ga0209030_100906 | Not Available | 631 | Open in IMG/M |
| Ga0209030_101483 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 538 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209030_100171 | Ga0209030_1001712 | F046373 | MINSFIAEYHCYVVAHNNVDDYRICELEAGNELSSLLPHFEQFDTYELALARVP |
| Ga0209030_100458 | Ga0209030_1004581 | F045749 | ITNDDRRFCVMYGRIQNETELFDFFGGREQTADYFENLFAESEKHAGVIKSFLLKYNISDEFKANGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLSPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF |
| Ga0209030_100589 | Ga0209030_1005891 | F077781 | AAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT |
| Ga0209030_100866 | Ga0209030_1008662 | F051069 | MAYRVSISSTELVTRAEVVAYAKIENTVENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRF |
| Ga0209030_100906 | Ga0209030_1009061 | F076005 | MKHFKVRVQYLNGIDFLFECDAVTAWQAGALARVAGRLAGMGGSMDVKETIVQEVA |
| Ga0209030_101483 | Ga0209030_1014831 | F043390 | MSYQVKTEDLQKVISLTLTAEQLETIAGALELYCIGLAEHNDPHLKYAADAQDAIIDVLESIFSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |