Sample 3300026070

Overview

Basic Information
IMG/M Taxon OID	3300026070 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116122 \| Ga0208423
Sample Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	84972504
Sequencing Scaffolds	25
Novel Protein Genes	28
Associated Families	27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp. PtaU1.Bin051	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Twitchell Island, San Francisco Bay, California
Coordinates	Lat. (^o)	38.107536	Long. (^o)	-121.649704	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y
F002306	Metagenome / Metatranscriptome	573	Y
F002505	Metagenome / Metatranscriptome	553	Y
F003085	Metagenome / Metatranscriptome	508	Y
F005672	Metagenome	393	Y
F008255	Metagenome / Metatranscriptome	336	Y
F016540	Metagenome / Metatranscriptome	246	Y
F020222	Metagenome / Metatranscriptome	225	Y
F021795	Metagenome / Metatranscriptome	217	Y
F023181	Metagenome / Metatranscriptome	211	Y
F027905	Metagenome / Metatranscriptome	193	Y
F031713	Metagenome	182	Y
F033898	Metagenome / Metatranscriptome	176	Y
F034408	Metagenome / Metatranscriptome	175	Y
F043050	Metagenome	157	Y
F051083	Metagenome	144	Y
F054309	Metagenome / Metatranscriptome	140	N
F056356	Metagenome	137	Y
F064849	Metagenome	128	Y
F067249	Metagenome	126	Y
F075042	Metagenome / Metatranscriptome	119	Y
F076224	Metagenome	118	Y
F082883	Metagenome / Metatranscriptome	113	Y
F098288	Metagenome	104	Y
F101438	Metagenome / Metatranscriptome	102	N
F103196	Metagenome / Metatranscriptome	101	N
F103788	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F000982

Metagenome / Metatranscriptome

814

F002306

Metagenome / Metatranscriptome

573

F002505

Metagenome / Metatranscriptome

553

F003085

Metagenome / Metatranscriptome

508

F005672

Metagenome

393

F008255

Metagenome / Metatranscriptome

336

F016540

Metagenome / Metatranscriptome

246

F020222

Metagenome / Metatranscriptome

225

F021795

Metagenome / Metatranscriptome

217

F023181

Metagenome / Metatranscriptome

211

F027905

Metagenome / Metatranscriptome

193

F031713

Metagenome

182

F033898

Metagenome / Metatranscriptome

176

F034408

Metagenome / Metatranscriptome

175

F043050

Metagenome

157

F051083

Metagenome

144

F054309

Metagenome / Metatranscriptome

140

F056356

Metagenome

137

F064849

Metagenome

128

F067249

Metagenome

126

F075042

Metagenome / Metatranscriptome

119

F076224

Metagenome

118

F082883

Metagenome / Metatranscriptome

113

F098288

Metagenome

104

F101438

Metagenome / Metatranscriptome

102

F103196

Metagenome / Metatranscriptome

101

F103788

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208423_1000312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4825	Open in IMG/M
Ga0208423_1000593	Not Available	3743	Open in IMG/M
Ga0208423_1001486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2442	Open in IMG/M
Ga0208423_1001551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	2383	Open in IMG/M
Ga0208423_1003453	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
Ga0208423_1004205	Not Available	1362	Open in IMG/M
Ga0208423_1005214	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1219	Open in IMG/M
Ga0208423_1005609	Not Available	1174	Open in IMG/M
Ga0208423_1007646	Not Available	1010	Open in IMG/M
Ga0208423_1008850	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	942	Open in IMG/M
Ga0208423_1010375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	873	Open in IMG/M
Ga0208423_1011035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	850	Open in IMG/M
Ga0208423_1011261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	842	Open in IMG/M
Ga0208423_1011529	Not Available	833	Open in IMG/M
Ga0208423_1013391	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
Ga0208423_1014454	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
Ga0208423_1016799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	708	Open in IMG/M
Ga0208423_1020296	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
Ga0208423_1021957	All Organisms → cellular organisms → Bacteria → FCB group	633	Open in IMG/M
Ga0208423_1022615	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp. PtaU1.Bin051	625	Open in IMG/M
Ga0208423_1022910	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	622	Open in IMG/M
Ga0208423_1030324	Not Available	554	Open in IMG/M
Ga0208423_1030409	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	553	Open in IMG/M
Ga0208423_1031605	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
Ga0208423_1035831	Not Available	517	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208423_1000312

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

4825

Open in IMG/M

Ga0208423_1000593

Not Available

3743

Open in IMG/M

Ga0208423_1001486

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

2442

Open in IMG/M

Ga0208423_1001551

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus

2383

Open in IMG/M

Ga0208423_1003453

All Organisms → cellular organisms → Bacteria

1514

Open in IMG/M

Ga0208423_1004205

Not Available

1362

Open in IMG/M

Ga0208423_1005214

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

1219

Open in IMG/M

Ga0208423_1005609

Not Available

1174

Open in IMG/M

Ga0208423_1007646

Not Available

1010

Open in IMG/M

Ga0208423_1008850

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

942

Open in IMG/M

Ga0208423_1010375

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

873

Open in IMG/M

Ga0208423_1011035

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

850

Open in IMG/M

Ga0208423_1011261

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

842

Open in IMG/M

Ga0208423_1011529

Not Available

833

Open in IMG/M

Ga0208423_1013391

All Organisms → cellular organisms → Bacteria

780

Open in IMG/M

Ga0208423_1014454

All Organisms → cellular organisms → Bacteria → Proteobacteria

755

Open in IMG/M

Ga0208423_1016799

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

708

Open in IMG/M

Ga0208423_1020296

All Organisms → cellular organisms → Bacteria

654

Open in IMG/M

Ga0208423_1021957

All Organisms → cellular organisms → Bacteria → FCB group

633

Open in IMG/M

Ga0208423_1022615

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp. PtaU1.Bin051

625

Open in IMG/M

Ga0208423_1022910

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

622

Open in IMG/M

Ga0208423_1030324

Not Available

554

Open in IMG/M

Ga0208423_1030409

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

553

Open in IMG/M

Ga0208423_1031605

All Organisms → cellular organisms → Bacteria

545

Open in IMG/M

Ga0208423_1035831

Not Available

517

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208423_1000312	Ga0208423_10003122	F020222	MDANANGWLGAPIKAPDEAKIGRLREEGNDEWRPKPLVPFGLLPKTPGAALRSLAGCPTRLRLRALRGAFSAAQRVRAHNVNRP
Ga0208423_1000593	Ga0208423_10005932	F103788	MDLLRNLFGNLTSGIIRLAVAAGVLFLCYLFIVKPVLKTTDDAFHSSGLDQIGNSIEGVSKEIKREVHRSFEATKRHGNPNKLIHCIKHANGDVKHIERCTRRF
Ga0208423_1001486	Ga0208423_10014863	F016540	MMNAIDSIPVLMDIIEDDAPGVEPAMDRTAAFLGEIEAHLATVIHDHADELVHNACREMEALLLEQVSDRLRAQLPSLIAGIIEQHFRGPGGGA
Ga0208423_1001551	Ga0208423_10015512	F101438	MLRQIFSVCLFVCSAASAWADSPVDVPVSQAARFEQILDLSNNVSLVRHPQQALDLADAMTDPEFLAAAMVMSANPEIWLKAMERAGAPDVPKNLSQMTTPEMLADWFYSSIDPQFQRAILTRMLDPKKPQRWMQAMSNPRFYMHALAFMNPATPMQWMKVTADGHMIQPMQAWFDPKTYLNWMRLPMPASSATQKSGDKVPLATYSWKPPQRY
Ga0208423_1003453	Ga0208423_10034532	F000982	MPQLRFTSRADRLLLHYRIRGKAYPSPRYWERLSQMLEEEAEKRGKTPPPPPLTYSLDHDPTDEEKTERLREQVVWADRNQLLHRVQMFFEAMPPSGWIRGEK
Ga0208423_1004205	Ga0208423_10042051	F027905	LVYLYAGLKAGATADEVLTRAEEDEAPFTGSDDLKAWVAQGLHQLS
Ga0208423_1005214	Ga0208423_10052141	F064849	SPARPHPSMILSMLDRADDLAKMTVLDPSGSPVVLGTLWRDKVAVLVFLRHFG
Ga0208423_1005609	Ga0208423_10056092	F003085	MYNGGRRTRPGNWPQSRRYADIGRQQSCPRQGKWTGHHRGLRAGHVDKWVIRELGRASRLLGNHRRSKGDRRNQHPGVSWPTRPVDEPTPVQTGRDTKNASTQGTGRQPEADRPGRTKAVVATHSTAGQGRALARRRGEPKPKGPTITLAGAREGNAGHDVCAKERQEGH
Ga0208423_1007028	Ga0208423_10070281	F082883	MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPDGPSLLDAF
Ga0208423_1007646	Ga0208423_10076461	F008255	MIEQIQDFMSEQTAAISSQVKKFRKDSVETVRDAVSVSADNLKSLKSPVRAIARSGVKVTNVSQTAVASLIELQSDILTSTLTGMALRLERAARADGIVELVRDQFELTQATRSRVVEEAQRAAEIFKVASRDLKTVATHAYERFSETAEAKAPAVKTAKRKAKRAVRKTTTRARRAVAA
Ga0208423_1008850	Ga0208423_10088501	F023181	KRELETRRYRWIGDVEDLTLSRIYPQNRTFLRLFVDAGGMIRVSAYHLHPRGVVISLLQLVQLFPRHLRVVELVSEVQGTFLVTSNTHGVDRLEPPPEAKVERLPLGTPVGDIVARHEARITEAVKAHPERAPVSFESLEDITASMARAHLVMARHRQKVGGLSRDELERLKGRPLSASEEAFLREVQGTEKPEPSSS
Ga0208423_1010375	Ga0208423_10103753	F005672	MTYTTHQLEHVTATASDWGLSQLKERGEDERKRTLSAVATDLNGRLKQCCKSADSPSEAALEMRRHLTLFSRYGLPNPKA
Ga0208423_1011035	Ga0208423_10110352	F021795	GKSSLTVLLSQEAREFLAEEKEKTGENYAVIVEKALQTLKKQGYKPPVLKHFPKREEVLIRAAAQEHPPAAVPVTSYENGAQHRILIDDLANYPTLEDIEREQAGKEQSGIYDIKANEGLLTRLLRSSANPLGRKRKWFK
Ga0208423_1011261	Ga0208423_10112611	F002505	NRVAALEFLDGALGADRRQLIKQYVENVDSSARLAERLWQAILEMTQGFTSAYQAALAHAVESDNPRWKPVVSRLFSRLIHYYGTDAKLRVFRYERWIPAKWTELHRLYMRAVELEIERVPVAHASSNGHSSQWTIEQEYLMVLLIHQLNTGNLSPAELDWATAQLRAWSRRLELDAVPRSLEGFFVDVAGKNGLVRRTGQDSGSMLRYVDTTPLCEQLDRALQALRQAEATDQGPAAPINQQRIATLDKVRPAIMPNLFADMRRDPRVSVSVVARVRVG
Ga0208423_1011529	Ga0208423_10115292	F034408	PLQFSSSTVNAPPVVQNFLNNLTQDTIIQRISYNLGQPNSFPGSPFSSLYFNQLKQSGATGVGVQLDVYGGPKYSVTGSFIDLGNLADVLAVAWPSGWPLFKQSNVKVSAILTQTPVSVPFNVTLTFLGVQLLDKSVDDLSDSEARARLRKLGIDSPDLALLLNP
Ga0208423_1013391	Ga0208423_10133912	F054309	LLPNGNRFAFFIRDVSELDDAGTSKIMRVGLRWFPQNYYPPTERPTDYKEFRRALGSSEK
Ga0208423_1014454	Ga0208423_10144541	F101438	MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDLADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGRMIQPMQAWFDPKTYLNWMRLPMPASS
Ga0208423_1016799	Ga0208423_10167991	F056356	LILALLASCGRDLEQAKRYSDIKSETDSLISQANLIINEQKAINDSLVKVRDDIYKINTQKTKLPELDKKITKIVESKSNIENVRKHLEAIKKFAQNGEKATKRLIFYKRKYITYATEIQLHDENIMIQEITNGLSTKKYLSKYMPK
Ga0208423_1020296	Ga0208423_10202961	F043050	VAGEPGPWVTPEKFELIERFKFFHELAWNRMPLRKRPLQRLARYRCANDEYRLPLEMLFSRWLIPARALS
Ga0208423_1021957	Ga0208423_10219571	F076224	DKYVFDAKIAEKELRWTEREIRNNEEKIKEFTFNIKFDSTFKNYAKTVSKHSFKVILDSNICRVDIPDFHYNENELPEIASIDPLIEQATNNIHFYTYKIPKIEKSKSEIKIEYYNNDSVYSYVVNCNSLNMDSLVQANSGTDLYNLEKFKPLKPSDDTMLIKYQFNKDYYNRYYSDDEFKQQMEELQKQLQEMSKDINNRKVRVRAQVT
Ga0208423_1022615	Ga0208423_10226152	F075042	MSDTAAPPLWAVLGSLGNIILSVGMIWYLLLFLSSCSTCPARPFAFIFIIAFGVIIALSGFELFRLLFYERRKSCRVCSLVAKMVE
Ga0208423_1022910	Ga0208423_10229102	F067249	DPNQKTYLSNQVKMVIEVKNNSVGGKTLENGKQQDPSKEMRVKFNELEATTNVRNFAVVVLSEMLLPPRTPYRWRFKEDVIGKENCKVFTLVARQLYPPGGLYIKSNIEDMLQKGQMKKTGEFLAMINYLKCL
Ga0208423_1025804	Ga0208423_10258042	F103196	FRHIKTNFTTPDDAMIETIELVEKAMGITLREGGFGNDVLRDMIIRAIGRLASINLSGGVYLNDGLFESAIVESCSKRNGTHAELANLAATGALDVQNQDHLKMVENWMTRA
Ga0208423_1030324	Ga0208423_10303241	F002306	PNPSTSSRNRRVSCMNIQSEIDFFSELGPVDKARFLSKLMGEVSEEVKVGGDGNDLSRYRFAVEINQRLSRLVYQILSEDLARPQDDVVIRMLLSSRADKGTERLMHKAYSRVVTSFESHDTTVLLNAT
Ga0208423_1030409	Ga0208423_10304091	F031713	GCIHYSYFKIGVFMSNKNVVIDLKARKDVDGQTFYVGKVEAPVLIDCSDGAVFLVFISDKGEEQLQIAPMDKKERDD
Ga0208423_1031605	Ga0208423_10316052	F033898	EQYRIIVADKSTKSFVSVEDPNGAPDKSQNGEKILSLLQGQLK
Ga0208423_1035831	Ga0208423_10358311	F051083	MRNKTVVPAATFAALFQELIPCSLLYAVLRRCGLRRRCPPWVTGAELISGLVFHVVAEAGTLAQHVKALTGKRITDGALAQRRARLPLAVLDQLMQAALQPKADPRQHPDAFYQGLRLCGVDGSLFSVTNTPQVKKQ
Ga0208423_1037910	Ga0208423_10379101	F098288	TLFESGVRLRLRVAADGGSELTLKVANQDCARLERGVVPSGEGKCEYDVYDTSVTGTVSLTRRLDAETTSELVAGRVAPERVLSQSQVRYLREVARIWPLPAEIRALGPMHVQTYRTPDKLYDIDVTELPGGTRYAEISRKVPVADALRLKQVMESDLSRAGIETCAD

Scaffold ID

Protein ID

Family

Sequence

Ga0208423_1000312

Ga0208423_10003122

F020222

MDANANGWLGAPIKAPDEAKIGRLREEGNDEWRPKPLVPFGLLPKTPGAALRSLAGCPTRLRLRALRGAFSAAQRVRAHNVNRP

Ga0208423_1000593

Ga0208423_10005932

F103788

MDLLRNLFGNLTSGIIRLAVAAGVLFLCYLFIVKPVLKTTDDAFHSSGLDQIGNSIEGVSKEIKREVHRSFEATKRHGNPNKLIHCIKHANGDVKHIERCTRRF

Ga0208423_1001486

Ga0208423_10014863

F016540

MMNAIDSIPVLMDIIEDDAPGVEPAMDRTAAFLGEIEAHLATVIHDHADELVHNACREMEALLLEQVSDRLRAQLPSLIAGIIEQHFRGPGGGA

Ga0208423_1001551

Ga0208423_10015512

F101438

MLRQIFSVCLFVCSAASAWADSPVDVPVSQAARFEQILDLSNNVSLVRHPQQALDLADAMTDPEFLAAAMVMSANPEIWLKAMERAGAPDVPKNLSQMTTPEMLADWFYSSIDPQFQRAILTRMLDPKKPQRWMQAMSNPRFYMHALAFMNPATPMQWMKVTADGHMIQPMQAWFDPKTYLNWMRLPMPASSATQKSGDKVPLATYSWKPPQRY

Ga0208423_1003453

Ga0208423_10034532

F000982

MPQLRFTSRADRLLLHYRIRGKAYPSPRYWERLSQMLEEEAEKRGKTPPPPPLTYSLDHDPTDEEKTERLREQVVWADRNQLLHRVQMFFEAMPPSGWIRGEK

Ga0208423_1004205

Ga0208423_10042051

F027905

LVYLYAGLKAGATADEVLTRAEEDEAPFTGSDDLKAWVAQGLHQLS

Ga0208423_1005214

Ga0208423_10052141

F064849

SPARPHPSMILSMLDRADDLAKMTVLDPSGSPVVLGTLWRDKVAVLVFLRHFG

Ga0208423_1005609

Ga0208423_10056092

F003085

MYNGGRRTRPGNWPQSRRYADIGRQQSCPRQGKWTGHHRGLRAGHVDKWVIRELGRASRLLGNHRRSKGDRRNQHPGVSWPTRPVDEPTPVQTGRDTKNASTQGTGRQPEADRPGRTKAVVATHSTAGQGRALARRRGEPKPKGPTITLAGAREGNAGHDVCAKERQEGH

Ga0208423_1007028

Ga0208423_10070281

F082883

MASRSHFAAPLLLAVVVALIVYVSLYPFRFAPDGPSLLDAF

Ga0208423_1007646

Ga0208423_10076461

F008255

MIEQIQDFMSEQTAAISSQVKKFRKDSVETVRDAVSVSADNLKSLKSPVRAIARSGVKVTNVSQTAVASLIELQSDILTSTLTGMALRLERAARADGIVELVRDQFELTQATRSRVVEEAQRAAEIFKVASRDLKTVATHAYERFSETAEAKAPAVKTAKRKAKRAVRKTTTRARRAVAA

Ga0208423_1008850

Ga0208423_10088501

F023181

KRELETRRYRWIGDVEDLTLSRIYPQNRTFLRLFVDAGGMIRVSAYHLHPRGVVISLLQLVQLFPRHLRVVELVSEVQGTFLVTSNTHGVDRLEPPPEAKVERLPLGTPVGDIVARHEARITEAVKAHPERAPVSFESLEDITASMARAHLVMARHRQKVGGLSRDELERLKGRPLSASEEAFLREVQGTEKPEPSSS

Ga0208423_1010375

Ga0208423_10103753

F005672

MTYTTHQLEHVTATASDWGLSQLKERGEDERKRTLSAVATDLNGRLKQCCKSADSPSEAALEMRRHLTLFSRYGLPNPKA

Ga0208423_1011035

Ga0208423_10110352

F021795

GKSSLTVLLSQEAREFLAEEKEKTGENYAVIVEKALQTLKKQGYKPPVLKHFPKREEVLIRAAAQEHPPAAVPVTSYENGAQHRILIDDLANYPTLEDIEREQAGKEQSGIYDIKANEGLLTRLLRSSANPLGRKRKWFK

Ga0208423_1011261

Ga0208423_10112611

F002505

NRVAALEFLDGALGADRRQLIKQYVENVDSSARLAERLWQAILEMTQGFTSAYQAALAHAVESDNPRWKPVVSRLFSRLIHYYGTDAKLRVFRYERWIPAKWTELHRLYMRAVELEIERVPVAHASSNGHSSQWTIEQEYLMVLLIHQLNTGNLSPAELDWATAQLRAWSRRLELDAVPRSLEGFFVDVAGKNGLVRRTGQDSGSMLRYVDTTPLCEQLDRALQALRQAEATDQGPAAPINQQRIATLDKVRPAIMPNLFADMRRDPRVSVSVVARVRVG

Ga0208423_1011529

Ga0208423_10115292

F034408

PLQFSSSTVNAPPVVQNFLNNLTQDTIIQRISYNLGQPNSFPGSPFSSLYFNQLKQSGATGVGVQLDVYGGPKYSVTGSFIDLGNLADVLAVAWPSGWPLFKQSNVKVSAILTQTPVSVPFNVTLTFLGVQLLDKSVDDLSDSEARARLRKLGIDSPDLALLLNP

Ga0208423_1013391

Ga0208423_10133912

F054309

LLPNGNRFAFFIRDVSELDDAGTSKIMRVGLRWFPQNYYPPTERPTDYKEFRRALGSSEK

Ga0208423_1014454

Ga0208423_10144541

F101438

MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDLADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGRMIQPMQAWFDPKTYLNWMRLPMPASS

Ga0208423_1016799

Ga0208423_10167991

F056356

LILALLASCGRDLEQAKRYSDIKSETDSLISQANLIINEQKAINDSLVKVRDDIYKINTQKTKLPELDKKITKIVESKSNIENVRKHLEAIKKFAQNGEKATKRLIFYKRKYITYATEIQLHDENIMIQEITNGLSTKKYLSKYMPK

Ga0208423_1020296

Ga0208423_10202961

F043050

VAGEPGPWVTPEKFELIERFKFFHELAWNRMPLRKRPLQRLARYRCANDEYRLPLEMLFSRWLIPARALS

Ga0208423_1021957

Ga0208423_10219571

F076224

DKYVFDAKIAEKELRWTEREIRNNEEKIKEFTFNIKFDSTFKNYAKTVSKHSFKVILDSNICRVDIPDFHYNENELPEIASIDPLIEQATNNIHFYTYKIPKIEKSKSEIKIEYYNNDSVYSYVVNCNSLNMDSLVQANSGTDLYNLEKFKPLKPSDDTMLIKYQFNKDYYNRYYSDDEFKQQMEELQKQLQEMSKDINNRKVRVRAQVT

Ga0208423_1022615

Ga0208423_10226152

F075042

MSDTAAPPLWAVLGSLGNIILSVGMIWYLLLFLSSCSTCPARPFAFIFIIAFGVIIALSGFELFRLLFYERRKSCRVCSLVAKMVE

Ga0208423_1022910

Ga0208423_10229102

F067249

DPNQKTYLSNQVKMVIEVKNNSVGGKTLENGKQQDPSKEMRVKFNELEATTNVRNFAVVVLSEMLLPPRTPYRWRFKEDVIGKENCKVFTLVARQLYPPGGLYIKSNIEDMLQKGQMKKTGEFLAMINYLKCL

Ga0208423_1025804

Ga0208423_10258042

F103196

FRHIKTNFTTPDDAMIETIELVEKAMGITLREGGFGNDVLRDMIIRAIGRLASINLSGGVYLNDGLFESAIVESCSKRNGTHAELANLAATGALDVQNQDHLKMVENWMTRA

Ga0208423_1030324

Ga0208423_10303241

F002306

PNPSTSSRNRRVSCMNIQSEIDFFSELGPVDKARFLSKLMGEVSEEVKVGGDGNDLSRYRFAVEINQRLSRLVYQILSEDLARPQDDVVIRMLLSSRADKGTERLMHKAYSRVVTSFESHDTTVLLNAT

Ga0208423_1030409

Ga0208423_10304091

F031713

GCIHYSYFKIGVFMSNKNVVIDLKARKDVDGQTFYVGKVEAPVLIDCSDGAVFLVFISDKGEEQLQIAPMDKKERDD

Ga0208423_1031605

Ga0208423_10316052

F033898

EQYRIIVADKSTKSFVSVEDPNGAPDKSQNGEKILSLLQGQLK

Ga0208423_1035831

Ga0208423_10358311

F051083

MRNKTVVPAATFAALFQELIPCSLLYAVLRRCGLRRRCPPWVTGAELISGLVFHVVAEAGTLAQHVKALTGKRITDGALAQRRARLPLAVLDQLMQAALQPKADPRQHPDAFYQGLRLCGVDGSLFSVTNTPQVKKQ

Ga0208423_1037910

Ga0208423_10379101

F098288

TLFESGVRLRLRVAADGGSELTLKVANQDCARLERGVVPSGEGKCEYDVYDTSVTGTVSLTRRLDAETTSELVAGRVAPERVLSQSQVRYLREVARIWPLPAEIRALGPMHVQTYRTPDKLYDIDVTELPGGTRYAEISRKVPVADALRLKQVMESDLSRAGIETCAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026070: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences