| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025670 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118071 | Gp0127832 | Ga0209081 |
| Sample Name | Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 479676803 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → mesocosm → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 27.37 | Long. (o) | -90.57 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006552 | Metagenome | 370 | Y |
| F050430 | Metagenome / Metatranscriptome | 145 | N |
| F066857 | Metagenome / Metatranscriptome | 126 | N |
| F101338 | Metagenome | 102 | N |
| F101886 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209081_1000305 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 29653 | Open in IMG/M |
| Ga0209081_1035954 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 2106 | Open in IMG/M |
| Ga0209081_1071816 | Not Available | 1277 | Open in IMG/M |
| Ga0209081_1153123 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 716 | Open in IMG/M |
| Ga0209081_1205676 | Not Available | 568 | Open in IMG/M |
| Ga0209081_1214042 | Not Available | 550 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209081_1000305 | Ga0209081_100030526 | F101886 | MLRNIFITGFCIANITLFILIGIEVAAVTPEQAMLEGMTQRIYASISTIDYIMATLWGVILFTTLTANKEWFLRSAWLYLGFYLCDIHFGHYMGIEMGEPLWIVAPLILAAIQSAFLYWSRKHIDKLTMPIPSQKWHETQGTSL |
| Ga0209081_1035954 | Ga0209081_10359542 | F101886 | MLKKILIIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYSILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVVIQAGFLFWAKTRIHAVSFSL |
| Ga0209081_1071816 | Ga0209081_10718163 | F050430 | MDKKLKENLIVGTKIVGMLFFLIVLITSLVWPGGVD |
| Ga0209081_1153123 | Ga0209081_11531232 | F006552 | KNNGMAPIDLRYLDLGKKVLIVXENAMNQYPTVWEATPNVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV |
| Ga0209081_1205676 | Ga0209081_12056761 | F066857 | MCRLSCRRLDYLHDWQEKAKRVIDIFLITKGNVQFLDVFCIFQCQQNKGFSHFLDTDSKLTVYRDGVVRPSRKDNILLPVVFD |
| Ga0209081_1214042 | Ga0209081_12140421 | F101338 | FSLSIAVLGLVARASAVYMPFFKRILCEGIISAVFLRLEIQVFVPYLTLLTLLTGVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |