| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025531 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118071 | Gp0127826 | Ga0209707 |
| Sample Name | Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 310104354 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| Not Available | 4 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → mesocosm → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Hudson Canyon | |||||||
| Coordinates | Lat. (o) | 39.54 | Long. (o) | -72.41 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015265 | Metagenome / Metatranscriptome | 256 | Y |
| F045360 | Metagenome | 153 | Y |
| F050430 | Metagenome / Metatranscriptome | 145 | N |
| F058538 | Metagenome / Metatranscriptome | 135 | N |
| F083669 | Metagenome / Metatranscriptome | 112 | Y |
| F094002 | Metagenome | 106 | Y |
| F094922 | Metagenome / Metatranscriptome | 105 | Y |
| F096688 | Metagenome / Metatranscriptome | 104 | N |
| F103884 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209707_1000307 | All Organisms → cellular organisms → Bacteria | 31182 | Open in IMG/M |
| Ga0209707_1020960 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 2133 | Open in IMG/M |
| Ga0209707_1030697 | Not Available | 1629 | Open in IMG/M |
| Ga0209707_1047347 | All Organisms → Viruses → Predicted Viral | 1183 | Open in IMG/M |
| Ga0209707_1054518 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | 1066 | Open in IMG/M |
| Ga0209707_1062955 | All Organisms → cellular organisms → Bacteria | 960 | Open in IMG/M |
| Ga0209707_1085095 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 766 | Open in IMG/M |
| Ga0209707_1089179 | Not Available | 739 | Open in IMG/M |
| Ga0209707_1096054 | Not Available | 699 | Open in IMG/M |
| Ga0209707_1106346 | Not Available | 646 | Open in IMG/M |
| Ga0209707_1108077 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | 638 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209707_1000307 | Ga0209707_100030714 | F103884 | LIVKETTDLDDIKALLCDPDIYDTITDDNSGLAQDFEPPVNDEYLYIGGYVNGKIVALMVYHKYLDGNKCHVQVLPEYRKEYALKFGEQSLLFKGTLPLYAEIPDLYKNVLDFALLNNFKVIDTKENDYIKNGKAYDVNVLEFQHGFC |
| Ga0209707_1020960 | Ga0209707_10209605 | F083669 | MCEWEGRTKTFMVRSTPQILQILDNTFDLDGCIDRSVLIHKILLPYVKDVIASDNTEITNPEGVYDTIDEIFNDYINSV |
| Ga0209707_1030697 | Ga0209707_10306972 | F050430 | ENIIDVIKIAGMLFFLMILIGTLVWPGGVETLINLFQ |
| Ga0209707_1047347 | Ga0209707_10473471 | F094922 | MNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGAVGYA |
| Ga0209707_1054518 | Ga0209707_10545181 | F058538 | VYSQYETTVMNRRRLHHLLSWVNRELHLDYEVIQENRDVFYVIFHDLDIKKTVAIQKHLKSNPHTEN |
| Ga0209707_1062955 | Ga0209707_10629553 | F094922 | MNEAKCSEMDTILKVHKQRIDELEKLLDSIHTQLTQIKACAYGA |
| Ga0209707_1085095 | Ga0209707_10850951 | F015265 | KSSTMYPDHMTKNPKLIETNAIVNLNNVGLPVFLNPIYAIIPMASPTKNPTRFSIFSNKNSNGV |
| Ga0209707_1089179 | Ga0209707_10891791 | F096688 | MGIIKSLAVVGYATVMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGLELAGNRFRGGGGS |
| Ga0209707_1096054 | Ga0209707_10960542 | F045360 | SSKAKPKXIALAGKPLNIPILNQNGNGDAYQSXNKDQIIAIVKTIFKCNPVRFLVGDKSSXILLSIFVSVFXFIYERYFTIKKRPNKYIGPF |
| Ga0209707_1106346 | Ga0209707_11063461 | F094002 | MLEVRIFYASGALECPLPRSPNTTTAIAINTPIAAPNADAAASAIVDMLKVNN |
| Ga0209707_1108077 | Ga0209707_11080772 | F058538 | AWVNQKYYLEYEVVQENRDVFYITFHDLNIKQTVAIQKQIQGSSQPEHFHLH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |