| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025530 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110114 | Gp0061315 | Ga0207866 |
| Sample Name | Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 212247773 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Joint BioEnergy Institute, California, USA | |||||||
| Coordinates | Lat. (o) | 38.5402 | Long. (o) | -121.75 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000698 | Metagenome / Metatranscriptome | 930 | Y |
| F000927 | Metagenome / Metatranscriptome | 831 | Y |
| F004068 | Metagenome / Metatranscriptome | 454 | Y |
| F012742 | Metagenome | 277 | Y |
| F036567 | Metagenome / Metatranscriptome | 169 | Y |
| F037084 | Metagenome | 168 | Y |
| F060529 | Metagenome / Metatranscriptome | 132 | Y |
| F072104 | Metagenome / Metatranscriptome | 121 | N |
| F073002 | Metagenome / Metatranscriptome | 120 | Y |
| F089797 | Metagenome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207866_1023707 | Not Available | 1081 | Open in IMG/M |
| Ga0207866_1024636 | Not Available | 1038 | Open in IMG/M |
| Ga0207866_1030162 | Not Available | 846 | Open in IMG/M |
| Ga0207866_1038221 | Not Available | 671 | Open in IMG/M |
| Ga0207866_1039495 | Not Available | 650 | Open in IMG/M |
| Ga0207866_1044047 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 585 | Open in IMG/M |
| Ga0207866_1044846 | Not Available | 575 | Open in IMG/M |
| Ga0207866_1047691 | Not Available | 542 | Open in IMG/M |
| Ga0207866_1049404 | Not Available | 525 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207866_1023707 | Ga0207866_10237071 | F000927 | MDYSSYFIFLYRMFNMDSGATNFMQATSKHKLSTEIFPDFIHLYSRGDKKIKNSKPSTKIKSTESFTKDLVLKFLPETSPELNILQKIFQDLTHYDKLVIQLI |
| Ga0207866_1024636 | Ga0207866_10246361 | F073002 | KVRILSQLRESDLPVGDASRTLPSSSGLLEVLPIYQLLVDYIGSKVCSVS |
| Ga0207866_1030162 | Ga0207866_10301621 | F004068 | MGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSSAFVAKNSDTTSWDELLHYLH |
| Ga0207866_1038221 | Ga0207866_10382211 | F000698 | VHSGPFGRLTKLGAKWTELVQKFVPQSRVGIFHNERTCFTPLNPKLTSEPFGCPTKLGAKRAGLVQKFVPQNHVRIFRNECTRSSPLDPKLTFWCVSYYLGASGTVWLPYETQCKTVQTSAKVRATKSRRNFSQRTHPIHPIKS |
| Ga0207866_1039495 | Ga0207866_10394951 | F012742 | GPFGCLTKLGGKQAELVQKCVPRSRVGIFRNERTLSTPLDPKLMFWCVLYYLGAFGTIWLPYKTRCKTGRTSAKVRATKSRRNFSNECTRSTPLDPKLTFWCVRTIWEHLGLFGSLTKLGAKRAELVEKFVPRSRPGIFRNEHTRCTPLDPKLTFWCVSYYLCAFGTIWLP |
| Ga0207866_1044047 | Ga0207866_10440471 | F072104 | PIGDRAGVPDLSVSRDKFDLAEYDPHDPTTTSEPEAPMQSLNQLPVVTDLVDARSA |
| Ga0207866_1044846 | Ga0207866_10448461 | F036567 | VICKKLKAAASSNFYPLFLSDLALELNTKVVPNFIRNLLAKFQPKRIGIAGDNRKLQKLCFL |
| Ga0207866_1047691 | Ga0207866_10476911 | F060529 | WYQTGRNSNFKFKFKKMKNSQKIPKNTSRCDESNGVKFSQKFVHLV |
| Ga0207866_1048477 | Ga0207866_10484771 | F089797 | MVPNAPKHYETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYINYNSL |
| Ga0207866_1049404 | Ga0207866_10494041 | F037084 | CEKSRHDFVAQAFALIGPVHPILHQVSCNYETIPNAPKHYETHQNMSLGSNGVDQVRSLRKIQCDFVARTFVLIEPVQYVLKQVSCSYGTIPNAPKYYKNAPKH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |