NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025529

3300025529: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025529 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0061316 | Ga0207865
Sample NameIonic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size161245640
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002513Metagenome / Metatranscriptome552Y
F009664Metagenome / Metatranscriptome314Y
F020484Metagenome / Metatranscriptome223Y
F035610Metagenome / Metatranscriptome171Y
F037034Metagenome / Metatranscriptome168Y
F068340Metagenome / Metatranscriptome124Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207865_113830Not Available1591Open in IMG/M
Ga0207865_122031Not Available931Open in IMG/M
Ga0207865_125031Not Available813Open in IMG/M
Ga0207865_126837Not Available757Open in IMG/M
Ga0207865_130766Not Available658Open in IMG/M
Ga0207865_130878Not Available656Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207865_113830Ga0207865_1138302F020484MARTLDVARSEIRDRLQRWDKMDTTLLFGINFGRIRTRWKEKFVHFAMEQCFSTGSVLEIERKIREDEAAMGQRGIEGGDDDVKQ
Ga0207865_122031Ga0207865_1220311F037034MVPNAPKWYETHQNMSLGSNGVDRVLSLRKIPMRLRGTNFCIT
Ga0207865_125031Ga0207865_1250311F002513MVLKVLWIKILFIKLTNSSKHSLMLAKIGIEVHLMHQF
Ga0207865_126837Ga0207865_1268371F035610MHEGTIYLTTLIELFVHIDCEKHSLRVLTSRETTKDKLANMLVSKSQTIE
Ga0207865_130766Ga0207865_1307662F009664KIFQVVYLESYYSETFNQMHADTSFRNGSGASTEWRETFKNMSFGPKVVDWACSLEQNNKRF
Ga0207865_130878Ga0207865_1308781F068340MGWIRCVGCEKLKRDFVAQTFALIGPVQYVLQQVSCSYGTIPNARKYHKTDRNISLGSNGVDWVHSLRKISTXLCGTSFCINWSSSSHFAPSFMQLRNDPKCTQTLXNTPKHEFRVQWGGSGAFVVKNTMXLRGTNFCINXTSSVCFETSFLQLRNDPKCTQILQNAPKH
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