Sample 3300025465

Overview

Basic Information
IMG/M Taxon OID	3300025465 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118071 \| Gp0127823 \| Ga0209184
Sample Name	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	257123956
Sequencing Scaffolds	15
Novel Protein Genes	18
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine cold seep biome → mesocosm → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Hudson Canyon
Coordinates	Lat. (^o)	39.29	Long. (^o)	-72.2	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015151	Metagenome / Metatranscriptome	257	Y
F016531	Metagenome / Metatranscriptome	246	Y
F023452	Metagenome / Metatranscriptome	210	N
F032825	Metagenome	179	Y
F055413	Metagenome	138	Y
F056065	Metagenome	138	Y
F058538	Metagenome / Metatranscriptome	135	N
F061294	Metagenome / Metatranscriptome	132	Y
F066857	Metagenome / Metatranscriptome	126	N
F066858	Metagenome / Metatranscriptome	126	N
F083802	Metagenome / Metatranscriptome	112	N
F089052	Metagenome	109	N
F097667	Metagenome / Metatranscriptome	104	N
F105864	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F015151

Metagenome / Metatranscriptome

257

F016531

Metagenome / Metatranscriptome

246

F023452

Metagenome / Metatranscriptome

210

F032825

Metagenome

179

F055413

Metagenome

138

F056065

Metagenome

138

F058538

Metagenome / Metatranscriptome

135

F061294

Metagenome / Metatranscriptome

132

F066857

Metagenome / Metatranscriptome

126

F066858

Metagenome / Metatranscriptome

126

F083802

Metagenome / Metatranscriptome

112

F089052

Metagenome

109

F097667

Metagenome / Metatranscriptome

104

F105864

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209184_1000385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	50109	Open in IMG/M
Ga0209184_1007269	All Organisms → cellular organisms → Bacteria → Proteobacteria	3618	Open in IMG/M
Ga0209184_1010777	Not Available	2655	Open in IMG/M
Ga0209184_1011688	Not Available	2481	Open in IMG/M
Ga0209184_1022978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	1499	Open in IMG/M
Ga0209184_1033246	All Organisms → cellular organisms → Archaea	1144	Open in IMG/M
Ga0209184_1035110	Not Available	1099	Open in IMG/M
Ga0209184_1037689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1046	Open in IMG/M
Ga0209184_1044092	Not Available	934	Open in IMG/M
Ga0209184_1052251	All Organisms → cellular organisms → Archaea	825	Open in IMG/M
Ga0209184_1059660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	750	Open in IMG/M
Ga0209184_1080135	Not Available	606	Open in IMG/M
Ga0209184_1082180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea	595	Open in IMG/M
Ga0209184_1085866	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
Ga0209184_1086341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	574	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209184_1000385

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

50109

Open in IMG/M

Ga0209184_1007269

All Organisms → cellular organisms → Bacteria → Proteobacteria

3618

Open in IMG/M

Ga0209184_1010777

Not Available

2655

Open in IMG/M

Ga0209184_1011688

Not Available

2481

Open in IMG/M

Ga0209184_1022978

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus

1499

Open in IMG/M

Ga0209184_1033246

All Organisms → cellular organisms → Archaea

1144

Open in IMG/M

Ga0209184_1035110

Not Available

1099

Open in IMG/M

Ga0209184_1037689

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium

1046

Open in IMG/M

Ga0209184_1044092

Not Available

934

Open in IMG/M

Ga0209184_1052251

All Organisms → cellular organisms → Archaea

825

Open in IMG/M

Ga0209184_1059660

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium

750

Open in IMG/M

Ga0209184_1080135

Not Available

606

Open in IMG/M

Ga0209184_1082180

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Parahaliea → Parahaliea mediterranea

595

Open in IMG/M

Ga0209184_1085866

All Organisms → cellular organisms → Bacteria → Proteobacteria

576

Open in IMG/M

Ga0209184_1086341

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales

574

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209184_1000385	Ga0209184_100038539	F055413	MLKVTDLATNKELDSKTMISVRGGFDPFAILIDGSTSLNNKVADVDQIFQLGLSQTNAGQVTNNQAINGGNGIVYAPVDQNLSQSNLMNVYDIGNVSVS
Ga0209184_1007269	Ga0209184_10072692	F056065	MSVPSYSILCTQCDYRSSSNATNGQYYYKDDEGQFNLERQLGWCNGCQSITAIEDFSDAAKVAGEIRSNLYSIRRDTGTVFANILNVLFKSRREWIDSTIVTINSYAKYIELAKARAGQERCLKCSSYVVVPYKPAKEGGDLDVRGFMYHGQHGTNVEHPSCGGMFYEKADNVRLHGMFEPRFYKPDGSFIES
Ga0209184_1010777	Ga0209184_10107772	F083802	MKDAITITKTEIQKGKIGHSKWLKHKESRFNSLFPKRLEKVYSTIRSLSKLSNRNNYFYETSNIFTALSSIVFELRELAASYGLESSDIKIDIYSLSGQQKNLKLKTNDIKNNDAKDFASELLELIEQKIKTEEKLHSEINALKRELSFLRDK
Ga0209184_1011688	Ga0209184_10116882	F055413	MLNITDLTTSKELDTKTMAGVRGGFDPFAILIDGSTSLNSKVADVDQVFAFGLTQNNAGAVTNNQALAGGNGLIYAPVSQHLDQNSNMSVSGIGNVAVS
Ga0209184_1011688	Ga0209184_10116885	F055413	MLNITDLTASKELDTKTMTSVRGGFDPFAIIDGSTSLNNKVADVDQIFMFDLAQNNAGQVTNNQAIQGGNGIIYAPVTQHLDQYSDMTVRGIGRVSVS
Ga0209184_1022978	Ga0209184_10229781	F023452	ASGMRVKQVKPASIPIAPKKPLIKNNLVLFIFIATRPVDFNIGNITIKANRFRKKTTSRICKFSAAFLIKITMIEKKTIDKIFKIIALV
Ga0209184_1033246	Ga0209184_10332461	F066857	MCRLSCRRLDYLHDWQKKAERVIDMFLITKGNVQFLDVFCIFQCQQNKGFSHFLDTDSKLMVYRDGVVYPSRKDNILLPVVFDEFSAMP
Ga0209184_1035110	Ga0209184_10351101	F032825	MSSLQEILDRAIATNGPDGFMIQQLRNQIMAAKRNQSTRQIYTSGITANHSPKADAQF
Ga0209184_1037689	Ga0209184_10376893	F061294	VYLHSHNVVYGQIDYMLPTHPPTVEMLAISVKDVCRGDSEYTYVFEQIEQRYIDLVGDVGVSTQVIFYYVSNVIISLLVLHRKNSQLSSEILIKIIQRFNFRDAILRAGIEVIAEQVLRRCFVAINESNARSFA
Ga0209184_1044092	Ga0209184_10440922	F055413	MLNITDLTANKALDSKTMTSIRGGFDPFAILLDGSTSLNNKVADVDQVFAFAFTQNNAAAVTNNQAISGGNGQIYAPVNQNLDQYSDMTVSGIGNVSVS
Ga0209184_1044487	Ga0209184_10444872	F105864	HRATNFRPNILVTNTPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK
Ga0209184_1047940	Ga0209184_10479401	F066858	SFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPANVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG
Ga0209184_1052251	Ga0209184_10522511	F089052	YQRLPKLLFRIDHLEISHGYDANWRNFVVVVYAALWFIPEYPQFLR
Ga0209184_1059660	Ga0209184_10596601	F058538	MYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDIKKTVAIQKHLKRSLHTTN
Ga0209184_1080135	Ga0209184_10801352	F015151	MITLKNGLILSEDKNGFESWNHLTDKIDKGSYTKFVDLPDIFYKELFEDDRTLLTKLEHPELASILERTKV
Ga0209184_1082180	Ga0209184_10821801	F055413	MLNITDLTASKELDTKTMAGVRGGFDPFAILIDGSTSLRNKVADVDQSFAFGLTQNNAGAVTNNQAITGGNGIVYAPVDQNLSQSNWMDVSGLGNISI
Ga0209184_1085866	Ga0209184_10858661	F016531	MLWGIGGVGKLSQAAIRSGFDGSVVSNVNAPDRLLVLGFVGSRVASELIDRGESTVIIKDEDRSLANDKINDRKPGDVVN
Ga0209184_1086341	Ga0209184_10863411	F097667	LKIKYIVIAIATIISPAIVNHFAASFSINLLKVSPNLNDKYETTKNRNPLDTKQTIKNIKILKPIIPLVMVNTLKGSGVKPARNRVPKKRIKFIPLDKL

Scaffold ID

Protein ID

Family

Sequence

Ga0209184_1000385

Ga0209184_100038539

F055413

MLKVTDLATNKELDSKTMISVRGGFDPFAILIDGSTSLNNKVADVDQIFQLGLSQTNAGQVTNNQAINGGNGIVYAPVDQNLSQSNLMNVYDIGNVSVS

Ga0209184_1007269

Ga0209184_10072692

F056065

MSVPSYSILCTQCDYRSSSNATNGQYYYKDDEGQFNLERQLGWCNGCQSITAIEDFSDAAKVAGEIRSNLYSIRRDTGTVFANILNVLFKSRREWIDSTIVTINSYAKYIELAKARAGQERCLKCSSYVVVPYKPAKEGGDLDVRGFMYHGQHGTNVEHPSCGGMFYEKADNVRLHGMFEPRFYKPDGSFIES

Ga0209184_1010777

Ga0209184_10107772

F083802

MKDAITITKTEIQKGKIGHSKWLKHKESRFNSLFPKRLEKVYSTIRSLSKLSNRNNYFYETSNIFTALSSIVFELRELAASYGLESSDIKIDIYSLSGQQKNLKLKTNDIKNNDAKDFASELLELIEQKIKTEEKLHSEINALKRELSFLRDK

Ga0209184_1011688

Ga0209184_10116882

F055413

MLNITDLTTSKELDTKTMAGVRGGFDPFAILIDGSTSLNSKVADVDQVFAFGLTQNNAGAVTNNQALAGGNGLIYAPVSQHLDQNSNMSVSGIGNVAVS

Ga0209184_1011688

Ga0209184_10116885

F055413

MLNITDLTASKELDTKTMTSVRGGFDPFAIIDGSTSLNNKVADVDQIFMFDLAQNNAGQVTNNQAIQGGNGIIYAPVTQHLDQYSDMTVRGIGRVSVS

Ga0209184_1022978

Ga0209184_10229781

F023452

ASGMRVKQVKPASIPIAPKKPLIKNNLVLFIFIATRPVDFNIGNITIKANRFRKKTTSRICKFSAAFLIKITMIEKKTIDKIFKIIALV

Ga0209184_1033246

Ga0209184_10332461

F066857

MCRLSCRRLDYLHDWQKKAERVIDMFLITKGNVQFLDVFCIFQCQQNKGFSHFLDTDSKLMVYRDGVVYPSRKDNILLPVVFDEFSAMP

Ga0209184_1035110

Ga0209184_10351101

F032825

MSSLQEILDRAIATNGPDGFMIQQLRNQIMAAKRNQSTRQIYTSGITANHSPKADAQF

Ga0209184_1037689

Ga0209184_10376893

F061294

VYLHSHNVVYGQIDYMLPTHPPTVEMLAISVKDVCRGDSEYTYVFEQIEQRYIDLVGDVGVSTQVIFYYVSNVIISLLVLHRKNSQLSSEILIKIIQRFNFRDAILRAGIEVIAEQVLRRCFVAINESNARSFA

Ga0209184_1044092

Ga0209184_10440922

F055413

MLNITDLTANKALDSKTMTSIRGGFDPFAILLDGSTSLNNKVADVDQVFAFAFTQNNAAAVTNNQAISGGNGQIYAPVNQNLDQYSDMTVSGIGNVSVS

Ga0209184_1044487

Ga0209184_10444872

F105864

HRATNFRPNILVTNTPVISMINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK

Ga0209184_1047940

Ga0209184_10479401

F066858

SFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPANVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG

Ga0209184_1052251

Ga0209184_10522511

F089052

YQRLPKLLFRIDHLEISHGYDANWRNFVVVVYAALWFIPEYPQFLR

Ga0209184_1059660

Ga0209184_10596601

F058538

MYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDIKKTVAIQKHLKRSLHTTN

Ga0209184_1080135

Ga0209184_10801352

F015151

MITLKNGLILSEDKNGFESWNHLTDKIDKGSYTKFVDLPDIFYKELFEDDRTLLTKLEHPELASILERTKV

Ga0209184_1082180

Ga0209184_10821801

F055413

MLNITDLTASKELDTKTMAGVRGGFDPFAILIDGSTSLRNKVADVDQSFAFGLTQNNAGAVTNNQAITGGNGIVYAPVDQNLSQSNWMDVSGLGNISI

Ga0209184_1085866

Ga0209184_10858661

F016531

MLWGIGGVGKLSQAAIRSGFDGSVVSNVNAPDRLLVLGFVGSRVASELIDRGESTVIIKDEDRSLANDKINDRKPGDVVN

Ga0209184_1086341

Ga0209184_10863411

F097667

LKIKYIVIAIATIISPAIVNHFAASFSINLLKVSPNLNDKYETTKNRNPLDTKQTIKNIKILKPIIPLVMVNTLKGSGVKPARNRVPKKRIKFIPLDKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025465: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences