NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025343

3300025343: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025343 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0116319 | Ga0208138
Sample NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size44259044
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV11
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria2
Not Available8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationRauer Lake, Antarctica
CoordinatesLat. (o)-68.8244Long. (o)77.8344Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003128Metagenome506Y
F006730Metagenome366Y
F011984Metagenome285Y
F047394Metagenome150N
F059487Metagenome134Y
F100063Metagenome103N
F102170Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208138_100998All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV18343Open in IMG/M
Ga0208138_101631All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales4568Open in IMG/M
Ga0208138_101697All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria4344Open in IMG/M
Ga0208138_102324All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales2827Open in IMG/M
Ga0208138_102458Not Available2575Open in IMG/M
Ga0208138_103815Not Available1308Open in IMG/M
Ga0208138_104017Not Available1214Open in IMG/M
Ga0208138_104269Not Available1114Open in IMG/M
Ga0208138_104336All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1088Open in IMG/M
Ga0208138_105038Not Available877Open in IMG/M
Ga0208138_106099Not Available674Open in IMG/M
Ga0208138_106929Not Available577Open in IMG/M
Ga0208138_107380Not Available533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208138_100998Ga0208138_1009989F011984MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE
Ga0208138_101631Ga0208138_1016316F003128MKIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVEDK
Ga0208138_101697Ga0208138_1016971F003128MQIELSASEIKAAKKADDRGRVTLGSEFAGKTVTVAVLDVEDE
Ga0208138_101697Ga0208138_1016976F011984MRPIICDACQIRIDDSWAGPAIEVKVHNGVDSDVSGDYCVDCAGDIADAIRSVIEDEA
Ga0208138_102324Ga0208138_1023241F003128MQIEVSASEIKPAKKADDRGRITLGSEFARETVTVAVLEVEDEDDVEEVST
Ga0208138_102458Ga0208138_1024582F059487MGDPQDFEPTNPIDRFVDRVVIRSDCPVEPCASDSWVKMRAVAVAYLITIPGLYMMNQGFESVGLIVAVSNMLIAINIMSTRFNQRIEHGHTCGRSVIDANNRSDSNE
Ga0208138_103815Ga0208138_1038153F102170MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFSGVLL
Ga0208138_104017Ga0208138_1040172F006730MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN
Ga0208138_104269Ga0208138_1042692F100063MSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEMDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNDTPDGELRYVVMIRDEIETDSDANTVQLHPITGNYLPESIDGYVFGKITTESTEP
Ga0208138_104336Ga0208138_1043362F003128MQIEVSASEIKSDKKADDRGRVTLGSEFAGETVTVAVLEVEDE
Ga0208138_105038Ga0208138_1050382F047394MAANTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTISRLVGTVVRLGARDEYRFETVVRVAQQYIDEECGGAGQ
Ga0208138_106099Ga0208138_1060992F003128MQIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVDVEEPPE
Ga0208138_106929Ga0208138_1069291F003128MQIDVSASDIKSEKMADNRGRVTLGSEYAGKTVTVAVLEVADE
Ga0208138_107380Ga0208138_1073801F100063DLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTEEVELDANTVQLHPITGNYLPESIDGYVWRILEPDNDD
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