NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025235

3300025235: Marine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025235 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054668 | Ga0208206
Sample NameMarine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size104260121
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA0051
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria2
Not Available8
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth of Fiji, South Pacific Ocean
CoordinatesLat. (o)-28.41Long. (o)179.14Alt. (m)N/ADepth (m)3501.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020717Metagenome / Metatranscriptome222Y
F031535Metagenome182N
F040684Metagenome / Metatranscriptome161N
F052659Metagenome / Metatranscriptome142N
F054935Metagenome / Metatranscriptome139N
F060979Metagenome / Metatranscriptome132Y
F063768Metagenome / Metatranscriptome129N
F066848Metagenome / Metatranscriptome126N
F068928Metagenome / Metatranscriptome124Y
F073662Metagenome120Y
F076171Metagenome118N
F080654Metagenome / Metatranscriptome115N
F082562Metagenome113N
F089571Metagenome109N
F101336Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208206_1000400All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA00510423Open in IMG/M
Ga0208206_1001105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5845Open in IMG/M
Ga0208206_1001575All Organisms → cellular organisms → Bacteria4689Open in IMG/M
Ga0208206_1004931Not Available2301Open in IMG/M
Ga0208206_1007365Not Available1803Open in IMG/M
Ga0208206_1008127All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1695Open in IMG/M
Ga0208206_1008946All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1598Open in IMG/M
Ga0208206_1009943All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1499Open in IMG/M
Ga0208206_1010982All Organisms → cellular organisms → Bacteria1411Open in IMG/M
Ga0208206_1013764All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1225Open in IMG/M
Ga0208206_1014562Not Available1179Open in IMG/M
Ga0208206_1026469All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium799Open in IMG/M
Ga0208206_1029289Not Available745Open in IMG/M
Ga0208206_1033298Not Available683Open in IMG/M
Ga0208206_1039660Not Available607Open in IMG/M
Ga0208206_1042374Not Available580Open in IMG/M
Ga0208206_1043203Not Available571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208206_1000400Ga0208206_10004003F052659MLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVIL
Ga0208206_1001105Ga0208206_10011054F063768MDLHATPDPLTTAEGVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPALRTIRLVLADLEDRPR
Ga0208206_1001575Ga0208206_10015752F089571MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLKKLE
Ga0208206_1004931Ga0208206_10049312F040684MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAAGVQCPLRAQNTSINKKYCTNCAKSPWWKFWGKKKGCCNTNS
Ga0208206_1007365Ga0208206_10073653F076171SKKAFYQSAKIDSSQFFRVINGFQKPGFGFFEKLAIAFPDLNLSWFLTGEGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208206_1008127Ga0208206_10081271F089571NGTWEYLGEDKQNYTLKKVPPKTYNYDSKPQTWEERMEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN
Ga0208206_1008946Ga0208206_10089461F089571NGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK
Ga0208206_1009943Ga0208206_10099431F082562MNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRIYLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI
Ga0208206_1010982Ga0208206_10109821F066848MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDHVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNL
Ga0208206_1013764Ga0208206_10137641F031535TDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE
Ga0208206_1014562Ga0208206_10145622F080654VAEAISEEKTESEPFGKTNLEERQDLWNKIQKFDPEASAMDYYDNGGWDLEKMRSDLKVLLEKERFGK
Ga0208206_1026469Ga0208206_10264691F060979VTTTTEDEQLASIALGDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEGAEAWRLRAVNDHGMGKPSDAVGVLEAEVDPDLAEGEVAEESDSGTDGA
Ga0208206_1029289Ga0208206_10292891F068928IVRLKAQLSDTEDRLSEMKEKNDEMAIKLYGGNRNR
Ga0208206_1033298Ga0208206_10332981F020717ISIVACTRFLALLETTQCWDFLRPHHILHENKDIWCFRDLNEQKDISISALILMLSEN
Ga0208206_1039660Ga0208206_10396602F101336SFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSWQATY
Ga0208206_1042374Ga0208206_10423742F073662PSMLPRFDAFLRPTILKMQNKEIMLINSKKYLIIFI
Ga0208206_1043203Ga0208206_10432032F054935MKRRTFIKYTSLISTAVFLPLAQLFGAKPKPKNPFTTFDFNLPLQGSPFRKNCDSLDNYNDISFKTMIDDIVHYRTPAKLRDKLILGIKTEDD
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