| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025213 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054435 | Ga0208468 |
| Sample Name | Marine microbial communities from the Deep Indian Ocean - MP0960 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 96499077 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 2 |
| Not Available | 6 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | East of Madagascar, South Indian Ocean | |||||||
| Coordinates | Lat. (o) | -27.98 | Long. (o) | 63.25 | Alt. (m) | N/A | Depth (m) | 3504.69 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021319 | Metagenome | 219 | N |
| F033215 | Metagenome / Metatranscriptome | 178 | Y |
| F041257 | Metagenome / Metatranscriptome | 160 | N |
| F054935 | Metagenome / Metatranscriptome | 139 | N |
| F069480 | Metagenome | 124 | N |
| F071320 | Metagenome / Metatranscriptome | 122 | N |
| F074984 | Metagenome / Metatranscriptome | 119 | N |
| F082562 | Metagenome | 113 | N |
| F089571 | Metagenome | 109 | N |
| F094002 | Metagenome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208468_1003573 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 3116 | Open in IMG/M |
| Ga0208468_1003938 | Not Available | 2921 | Open in IMG/M |
| Ga0208468_1005307 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 2399 | Open in IMG/M |
| Ga0208468_1016360 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1104 | Open in IMG/M |
| Ga0208468_1017735 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1042 | Open in IMG/M |
| Ga0208468_1023205 | Not Available | 857 | Open in IMG/M |
| Ga0208468_1025285 | Not Available | 804 | Open in IMG/M |
| Ga0208468_1028141 | Not Available | 744 | Open in IMG/M |
| Ga0208468_1033498 | Not Available | 655 | Open in IMG/M |
| Ga0208468_1047078 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208468_1003573 | Ga0208468_10035731 | F089571 | MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE |
| Ga0208468_1003938 | Ga0208468_10039381 | F071320 | VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSRCFRNNPDRLYCSSDCRS |
| Ga0208468_1005307 | Ga0208468_10053076 | F021319 | EVGAARFIEIPSATTINGTKIRPPPIPNRLDIIPAKKLAPAEKTSKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY |
| Ga0208468_1016360 | Ga0208468_10163603 | F082562 | YRSNTEFKPQKQRLRLLTVIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI |
| Ga0208468_1017735 | Ga0208468_10177352 | F041257 | DVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFEGFTKRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ |
| Ga0208468_1023205 | Ga0208468_10232052 | F094002 | KKLESSNIYASGALECPLPRSPNITTAITINTPIAAPNAPIDASAIVEMLRLHHI |
| Ga0208468_1025285 | Ga0208468_10252851 | F074984 | MNNKTNTAEVILFNILYMFMNCDFDVLDKEAEIIENTMRELTDEEKKTIESQIKDNENIISKGFDKIKSRTMEMGKLINETKDSEGIKKSFIEVIKAMILIDGVIHKNEKTMFNELCKLWDVES |
| Ga0208468_1028141 | Ga0208468_10281411 | F033215 | VVFEVLNEAPLANVAPIGRLRVPPVEERVPAVALIPPLRDKSALPVTIFSPAASRVTGCAMLNPAIALSSVKAKLARSSVPTDREALSSIVEFAAKRRVVELSGNTPPKFCVPDTSRMPPESVSALAFVVRVVFFVFRVAPVSDKAFCSTNVVSGIEILVPDGALAPETRVIVPPEEFSDALSVNANAPERVRLPAPVSRAIPDKARASFTFR |
| Ga0208468_1033498 | Ga0208468_10334981 | F054935 | MKRRTFIKYTSLISTAVFLPLAKLFGAKPKPNKSLKTFISDLPLQGSPFRKNCDSLDNYNDISFKAMMEDIVHYRTPAKLRDKLILGIKTEDD |
| Ga0208468_1047078 | Ga0208468_10470782 | F069480 | KKPKLCVPCLIYIELIDRIYILESRNNIKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |