Sample 3300025212

Overview

Basic Information
IMG/M Taxon OID	3300025212 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054679 \| Ga0207916
Sample Name	Marine microbial communities from the Deep Indian Ocean - MP1141 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	94789918
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South Indian Ocean
Coordinates	Lat. (^o)	-29.65	Long. (^o)	92.99	Alt. (m)	N/A	Depth (m)	2402.15
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y
F004842	Metagenome / Metatranscriptome	421	Y
F016814	Metagenome / Metatranscriptome	244	N
F016979	Metagenome / Metatranscriptome	243	Y
F017907	Metagenome	238	Y
F021115	Metagenome / Metatranscriptome	220	N
F023136	Metagenome / Metatranscriptome	211	Y
F030783	Metagenome / Metatranscriptome	184	N
F044540	Metagenome / Metatranscriptome	154	Y
F071317	Metagenome / Metatranscriptome	122	N
F074010	Metagenome	120	N
F078840	Metagenome	116	N
F080161	Metagenome / Metatranscriptome	115	N
F082562	Metagenome	113	N
F082817	Metagenome	113	Y
F097524	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F002125

Metagenome / Metatranscriptome

591

F004842

Metagenome / Metatranscriptome

421

F016814

Metagenome / Metatranscriptome

244

F016979

Metagenome / Metatranscriptome

243

F017907

Metagenome

238

F021115

Metagenome / Metatranscriptome

220

F023136

Metagenome / Metatranscriptome

211

F030783

Metagenome / Metatranscriptome

184

F044540

Metagenome / Metatranscriptome

154

F071317

Metagenome / Metatranscriptome

122

F074010

Metagenome

120

F078840

Metagenome

116

F080161

Metagenome / Metatranscriptome

115

F082562

Metagenome

113

F082817

Metagenome

113

F097524

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207916_1000212	All Organisms → cellular organisms → Bacteria → Proteobacteria	10423	Open in IMG/M
Ga0207916_1000443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7411	Open in IMG/M
Ga0207916_1000756	All Organisms → cellular organisms → Bacteria	5745	Open in IMG/M
Ga0207916_1001186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4519	Open in IMG/M
Ga0207916_1002425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2967	Open in IMG/M
Ga0207916_1004781	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
Ga0207916_1004839	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
Ga0207916_1005037	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
Ga0207916_1008595	Not Available	1415	Open in IMG/M
Ga0207916_1013952	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1062	Open in IMG/M
Ga0207916_1014337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1046	Open in IMG/M
Ga0207916_1014714	Not Available	1030	Open in IMG/M
Ga0207916_1019263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	879	Open in IMG/M
Ga0207916_1023282	Not Available	783	Open in IMG/M
Ga0207916_1039703	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
Ga0207916_1040385	Not Available	557	Open in IMG/M
Ga0207916_1047360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	502	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207916_1000212

All Organisms → cellular organisms → Bacteria → Proteobacteria

10423

Open in IMG/M

Ga0207916_1000443

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

7411

Open in IMG/M

Ga0207916_1000756

All Organisms → cellular organisms → Bacteria

5745

Open in IMG/M

Ga0207916_1001186

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

4519

Open in IMG/M

Ga0207916_1002425

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus

2967

Open in IMG/M

Ga0207916_1004781

All Organisms → cellular organisms → Bacteria

2000

Open in IMG/M

Ga0207916_1004839

All Organisms → cellular organisms → Bacteria

1987

Open in IMG/M

Ga0207916_1005037

All Organisms → cellular organisms → Bacteria

1940

Open in IMG/M

Ga0207916_1008595

Not Available

1415

Open in IMG/M

Ga0207916_1013952

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

1062

Open in IMG/M

Ga0207916_1014337

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus

1046

Open in IMG/M

Ga0207916_1014714

Not Available

1030

Open in IMG/M

Ga0207916_1019263

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

879

Open in IMG/M

Ga0207916_1023282

Not Available

783

Open in IMG/M

Ga0207916_1039703

All Organisms → cellular organisms → Bacteria

563

Open in IMG/M

Ga0207916_1040385

Not Available

557

Open in IMG/M

Ga0207916_1047360

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus

502

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207916_1000212	Ga0207916_10002126	F097524	MFENDNLYLPVAERRPFVNVQLKTAETISAAETQLGPQ
Ga0207916_1000443	Ga0207916_10004432	F030783	MITDFKNKTPFLLGLLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSQDLVNSKTNITFIDFDIEDSELVSLTDQSLSKNYHQRAPPKI
Ga0207916_1000756	Ga0207916_10007568	F002125	QTYLLHTAVIALVGEPSLTSVDLFVSKDTANLTFLRKLPQTIIEVQKVNK
Ga0207916_1001186	Ga0207916_10011861	F002125	VIALVGEPSLTSVDLFVSKDTANLMFLRKLPQIIIEVQKVNK
Ga0207916_1002425	Ga0207916_10024251	F080161	LPSGASISAKSFLLEAFKPADIPAKRNPLGVTLLSSTNDQLESNWLKLFGILIYTNYSLILKKLSN
Ga0207916_1004781	Ga0207916_10047811	F002125	VIALVGEPSLTSVDLFVSKDTANLMFLRKLPQTIIEVQKVNK
Ga0207916_1004839	Ga0207916_10048395	F017907	ITMTEQTNVITIDGKSYAQEDLSEEQIRLVTKVAKFQKQTNDLKDAFEDANILHQQYSQALKTSLNNDETTKAMENSKAS
Ga0207916_1005037	Ga0207916_10050371	F021115	MRNHETTAELDNPLSSSKIGAYSGSIKATFFKNSKRYTGIPSVEINDELRAIICNSKIKIQPYTVKNKNSYFEIMLPKNIKGGLANLIIVKTLTTVGLKHKCISCKLEVDGSEKTICFHY
Ga0207916_1005246	Ga0207916_10052461	F016814	MIPIIMMLFGISTLGQFQLELPEFLPAPSLVICEEMDDTNFDPNCQHEDYSIF
Ga0207916_1008595	Ga0207916_10085953	F044540	MIKGATETSADADKLHQGVIDELRATTFTGNNCTSVNVKMNAKKKSIHPNIIQNIPATIKPGIEFGKT
Ga0207916_1013952	Ga0207916_10139521	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDVLDRIKRMKGIK
Ga0207916_1014337	Ga0207916_10143371	F004842	GTIPDIGAIKKAIKEINFLGVRILSEEINSLTLSKAPLLNNAEETANKPIRVIKEGLPNPAKAFSGERTPVAINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIRNLFNSIYPKTIFQKSLIGIIFFKKLFKNKFFLEYP
Ga0207916_1014714	Ga0207916_10147142	F071317	MLKKITAVGFITLFVGVTVASLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKPELKSSDSISRRFITDLDIFKIETNYIACFGNYDPGPMASLNLPLLI
Ga0207916_1019263	Ga0207916_10192631	F074010	HPKGSIWIGENRNMNDKTLLHSQALSFHENFLDVANDVFTTDKRFADVTEHKWMQPLFDKLMKLLEDVGFGKYYVVQADFNHAKDVPSHHRMLYVPCCTPDSIDLDIQTGEKGIFKLPLKEGSFIVMPENSGIRIISPPGKMFLGLIMGICKEDD
Ga0207916_1023282	Ga0207916_10232822	F078840	DSEHFTVKVSPNPLTVKLDNIPTLIFLLDLVTSIVCESEMYSDNFLSKSIFGELLSSTINIV
Ga0207916_1039703	Ga0207916_10397031	F082817	KRTFKAKNKGKPNSTIFLIRSNITPTDNEITVKAEIANIMGGIICPNTHLSSKGSKYQGEIILLIFFFISD
Ga0207916_1040385	Ga0207916_10403851	F023136	MFILLITKVTDKNAIIKKDKKTIPKDFKFDLRPKICLIAIIKDAKIQNXVKKIIGIIKSGVTAKNLN
Ga0207916_1047360	Ga0207916_10473601	F016979	MAENIVLQEAVMEQNVIYVVLFIQKGKRNLYVKNPKKLI

Scaffold ID

Protein ID

Family

Sequence

Ga0207916_1000212

Ga0207916_10002126

F097524

MFENDNLYLPVAERRPFVNVQLKTAETISAAETQLGPQ

Ga0207916_1000443

Ga0207916_10004432

F030783

MITDFKNKTPFLLGLLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSQDLVNSKTNITFIDFDIEDSELVSLTDQSLSKNYHQRAPPKI

Ga0207916_1000756

Ga0207916_10007568

F002125

QTYLLHTAVIALVGEPSLTSVDLFVSKDTANLTFLRKLPQTIIEVQKVNK

Ga0207916_1001186

Ga0207916_10011861

F002125

VIALVGEPSLTSVDLFVSKDTANLMFLRKLPQIIIEVQKVNK

Ga0207916_1002425

Ga0207916_10024251

F080161

LPSGASISAKSFLLEAFKPADIPAKRNPLGVTLLSSTNDQLESNWLKLFGILIYTNYSLILKKLSN

Ga0207916_1004781

Ga0207916_10047811

F002125

VIALVGEPSLTSVDLFVSKDTANLMFLRKLPQTIIEVQKVNK

Ga0207916_1004839

Ga0207916_10048395

F017907

ITMTEQTNVITIDGKSYAQEDLSEEQIRLVTKVAKFQKQTNDLKDAFEDANILHQQYSQALKTSLNNDETTKAMENSKAS

Ga0207916_1005037

Ga0207916_10050371

F021115

MRNHETTAELDNPLSSSKIGAYSGSIKATFFKNSKRYTGIPSVEINDELRAIICNSKIKIQPYTVKNKNSYFEIMLPKNIKGGLANLIIVKTLTTVGLKHKCISCKLEVDGSEKTICFHY

Ga0207916_1005246

Ga0207916_10052461

F016814

MIPIIMMLFGISTLGQFQLELPEFLPAPSLVICEEMDDTNFDPNCQHEDYSIF

Ga0207916_1008595

Ga0207916_10085953

F044540

MIKGATETSADADKLHQGVIDELRATTFTGNNCTSVNVKMNAKKKSIHPNIIQNIPATIKPGIEFGKT

Ga0207916_1013952

Ga0207916_10139521

F082562

MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDVLDRIKRMKGIK

Ga0207916_1014337

Ga0207916_10143371

F004842

GTIPDIGAIKKAIKEINFLGVRILSEEINSLTLSKAPLLNNAEETANKPIRVIKEGLPNPAKAFSGERTPVAINIPTHNKPVNSGAIVFLINKIIDIIKTTTVINASKLLLTTAIKFIRNLFNSIYPKTIFQKSLIGIIFFKKLFKNKFFLEYP

Ga0207916_1014714

Ga0207916_10147142

F071317

MLKKITAVGFITLFVGVTVASLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKPELKSSDSISRRFITDLDIFKIETNYIACFGNYDPGPMASLNLPLLI

Ga0207916_1019263

Ga0207916_10192631

F074010

HPKGSIWIGENRNMNDKTLLHSQALSFHENFLDVANDVFTTDKRFADVTEHKWMQPLFDKLMKLLEDVGFGKYYVVQADFNHAKDVPSHHRMLYVPCCTPDSIDLDIQTGEKGIFKLPLKEGSFIVMPENSGIRIISPPGKMFLGLIMGICKEDD

Ga0207916_1023282

Ga0207916_10232822

F078840

DSEHFTVKVSPNPLTVKLDNIPTLIFLLDLVTSIVCESEMYSDNFLSKSIFGELLSSTINIV

Ga0207916_1039703

Ga0207916_10397031

F082817

KRTFKAKNKGKPNSTIFLIRSNITPTDNEITVKAEIANIMGGIICPNTHLSSKGSKYQGEIILLIFFFISD

Ga0207916_1040385

Ga0207916_10403851

F023136

MFILLITKVTDKNAIIKKDKKTIPKDFKFDLRPKICLIAIIKDAKIQNXVKKIIGIIKSGVTAKNLN

Ga0207916_1047360

Ga0207916_10473601

F016979

MAENIVLQEAVMEQNVIYVVLFIQKGKRNLYVKNPKKLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025212: Marine microbial communities from the Deep Indian Ocean - MP1141 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences