| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025203 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054575 | Ga0208836 |
| Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MP0627 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 56914256 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005 | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -28.62 | Long. (o) | -11.8 | Alt. (m) | N/A | Depth (m) | 3850.45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002753 | Metagenome / Metatranscriptome | 532 | Y |
| F037770 | Metagenome | 167 | Y |
| F041257 | Metagenome / Metatranscriptome | 160 | N |
| F052659 | Metagenome / Metatranscriptome | 142 | N |
| F071317 | Metagenome / Metatranscriptome | 122 | N |
| F076171 | Metagenome | 118 | N |
| F076187 | Metagenome | 118 | Y |
| F082562 | Metagenome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208836_100451 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005 | 4632 | Open in IMG/M |
| Ga0208836_105331 | Not Available | 1505 | Open in IMG/M |
| Ga0208836_105525 | All Organisms → cellular organisms → Bacteria | 1479 | Open in IMG/M |
| Ga0208836_109185 | Not Available | 1121 | Open in IMG/M |
| Ga0208836_111855 | Not Available | 973 | Open in IMG/M |
| Ga0208836_117972 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 760 | Open in IMG/M |
| Ga0208836_127908 | Not Available | 576 | Open in IMG/M |
| Ga0208836_133030 | All Organisms → cellular organisms → Eukaryota | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208836_100451 | Ga0208836_1004514 | F052659 | MLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLEAQERNLTIEDLNQSIRSKWVILWAEV |
| Ga0208836_105331 | Ga0208836_1053311 | F076187 | SLAITHFFEFISTEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVP |
| Ga0208836_105525 | Ga0208836_1055252 | F076171 | MADLKEDHKHPFNSRLEKFRNHVDLKSKKAFYQLAKIDSSQFFRVINGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE |
| Ga0208836_109185 | Ga0208836_1091852 | F041257 | MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRADRFYPWEYGEE |
| Ga0208836_111855 | Ga0208836_1118552 | F071317 | MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKPELKSSDSISQRFITDLDIFKIETNYVTSFGKYDPGPITFLNLPLLI |
| Ga0208836_117972 | Ga0208836_1179721 | F082562 | ALVMNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKI |
| Ga0208836_127908 | Ga0208836_1279082 | F037770 | KASRPLAFNADTMVDLPEPGMPVRQTISFAKMKLFTDSSL |
| Ga0208836_133030 | Ga0208836_1330301 | F002753 | AVDIESVNNTVSDRFTPAVFEIESVNDTVSDRFTAAAVDIESVNNTVSDRFTAADFAIESVNDTDSDRFTPADFAIESVNDTDSVRFTPSVFETESVKLTVSDRFTPAAFETESVKLTVSDRFTPPVFEIESVNDTVSDRFTPAVFEIESVNDTVSDRFTPAAVDIESVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |