NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300025194

3300025194: Marine microbial communities from the Deep Pacific Ocean - MP1494 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025194 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054538 | Ga0208205
Sample NameMarine microbial communities from the Deep Pacific Ocean - MP1494 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size49107993
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
Not Available2
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth of Fiji, South Pacific Ocean
CoordinatesLat. (o)-25.49Long. (o)-179.52Alt. (m)N/ADepth (m)2147.76
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002753Metagenome / Metatranscriptome532Y
F013190Metagenome / Metatranscriptome273Y
F050430Metagenome / Metatranscriptome145N
F071317Metagenome / Metatranscriptome122N
F082562Metagenome113N
F089571Metagenome109N
F092695Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208205_100606All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix4495Open in IMG/M
Ga0208205_100892All Organisms → cellular organisms → Bacteria3565Open in IMG/M
Ga0208205_104826All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1323Open in IMG/M
Ga0208205_111868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales770Open in IMG/M
Ga0208205_118609Not Available592Open in IMG/M
Ga0208205_119609Not Available573Open in IMG/M
Ga0208205_124262All Organisms → cellular organisms → Eukaryota505Open in IMG/M
Ga0208205_124334All Organisms → cellular organisms → Eukaryota504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208205_100606Ga0208205_1006062F089571MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208205_100892Ga0208205_1008924F071317LKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYIACFGNYDPGPMASLNLPLLI
Ga0208205_104826Ga0208205_1048261F082562MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYQEIDTKSIFLLSQLTLGVKIPGRQKDVLDRIKRMKGIK
Ga0208205_111868Ga0208205_1118682F092695LTIEGRKTAKVDGGYDGGKYIKKVNNFAIPCYSWWRGKDLNLRPSGYEFYVPPYYWLISTYIN
Ga0208205_118609Ga0208205_1186092F050430MDKKLKENLIVGTKIVGMLFFLIVLITTLVWPGVDTLANLFLTKE
Ga0208205_119609Ga0208205_1196091F013190ILENSSMRTPNLMSLSQLYFSNAELGQEMSISATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK
Ga0208205_124262Ga0208205_1242621F002753TPAVFEIESVKLTDSDRFTPDVFDMESVNDTDSDRFTPAAFETESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAVFDIESVNDTDSVRFTPAAFETESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAAFAIESVKLTDSDRFTPAAFETESVKLTDSVRFTPAVFD
Ga0208205_124334Ga0208205_1243341F002753ESVNDTDSDRFTGAVFDIESVKLTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLTVSVRFTPAAFEIESVKLTVSDRFTPAAFEIESVKLT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.