NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025189

3300025189: Marine microbial communities from the Deep Atlantic Ocean - MP0144 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025189 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054474 | Ga0208704
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0144 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26552052
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → environmental samples → uncultured marine virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationWest of Cape Verde, Atlantic Ocean
CoordinatesLat. (o)14.52Long. (o)-26.0Alt. (m)N/ADepth (m)4005.01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F012125Metagenome283Y
F015611Metagenome / Metatranscriptome253Y
F034189Metagenome / Metatranscriptome175Y
F036736Metagenome / Metatranscriptome169Y
F046426Metagenome / Metatranscriptome151Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208704_101384Not Available1431Open in IMG/M
Ga0208704_105375Not Available650Open in IMG/M
Ga0208704_106987Not Available566Open in IMG/M
Ga0208704_107351Not Available550Open in IMG/M
Ga0208704_108205All Organisms → Viruses → environmental samples → uncultured marine virus517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208704_101384Ga0208704_1013844F036736VDKLNEMLIGMLAIIGGFVTKRIFSNHDALTDRISALEKVMLTKEDISSLERNMEMVVEHLINLKK
Ga0208704_105375Ga0208704_1053752F015611METTYKKFMEANVKSWKDMKDRDVLKAAEKFLKKMKPGNVLGYTLAHGEFTIFKNEKEWEKSAKDKTHGDMKWVRVE
Ga0208704_106987Ga0208704_1069871F034189MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECH
Ga0208704_107351Ga0208704_1073512F012125MSNTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFL
Ga0208704_108205Ga0208704_1082051F002078AMFEGQGWFAIVGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAKAEVEEEIDKAKAKVRQRVGMPDVLDGM
Ga0208704_108205Ga0208704_1082052F046426VLVCLMFLTGCSILPQLIAPAANFAIGFYDANDYYSKECLWYDEVKLNAETKKWFMDNTPPEGVARDLSVVSRNNDIYKEVCKEHKSVADK
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