NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025121

3300025121: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025121 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0055716 | Ga0208375
Sample NameSoil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size484751886
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral1
Not Available2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008498Metagenome / Metatranscriptome332Y
F009002Metagenome / Metatranscriptome324Y
F071896Metagenome / Metatranscriptome121N
F094578Metagenome / Metatranscriptome106Y
F097603Metagenome / Metatranscriptome104Y
F100657Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208375_1007747All Organisms → cellular organisms → Bacteria7106Open in IMG/M
Ga0208375_1040433All Organisms → Viruses → Predicted Viral1857Open in IMG/M
Ga0208375_1063200Not Available1302Open in IMG/M
Ga0208375_1104065Not Available875Open in IMG/M
Ga0208375_1143462All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon673Open in IMG/M
Ga0208375_1155920All Organisms → cellular organisms → Bacteria628Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208375_1007747Ga0208375_10077472F008498MSSVTYKHQPAIDATNGSVPLAGTSHLYTVTKVLWSDSIQEFLETLFLGTTLHVCCGMSKIGDYRLDFDPNNNPDFICDAARLSFADDSFDTILCDPPYNGKFQWNHDMLSELSRVASKRIIFQHWFIPANKFGLYKKAQEKFELTQPYVWQGQTYFGRAQIISVFDVRNSYLTKE
Ga0208375_1040433Ga0208375_10404333F071896MAKTTQSKNQSNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKTK
Ga0208375_1063200Ga0208375_10632002F100657MRQITISYTTSVFTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL
Ga0208375_1104065Ga0208375_11040651F071896IRIDNKIKIKDDYFMARKDIKLDNINYTIDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTK
Ga0208375_1132587Ga0208375_11325871F097603EVFEWYRPFEDRYSVMVNDVPILKKASIPFPFDFKETPFIAIRYLSLPGEFEGIGIPLILENSQLMLNMMKNQRLDATTLNIHKMWIVNPLANINKADLVTRPFGIIWSPDPNGVREVQFSDIKQSAFQEERLLKDDMRYASGVDDFSMGAGGAASSATEVRHLRESTLERVRLFVNHLGDGYAQLLRYWISLWRQFGTKKITIRILGEDGNYTFPIIEKDDLRGEFDFRATILPSIAG
Ga0208375_1143462Ga0208375_11434621F094578MNNQKERLKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNDIIKSTTFCKFDKRDFSNNCPICKKLG
Ga0208375_1155920Ga0208375_11559203F009002VSYRYQLEDLLYLLYPAAPTLVDAITVNRRRVEHGLLSVGLKIHCLGDGAQFHGIVSELGGAHNILEV
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