| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025089 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0127790 | Ga0209394 |
| Sample Name | Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 167229564 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 2 |
| All Organisms → cellular organisms → Archaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Baoshan, Yunnan, China | |||||||
| Coordinates | Lat. (o) | 25.4413 | Long. (o) | 98.46 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F051554 | Metagenome | 144 | Y |
| F064214 | Metagenome | 129 | Y |
| F091320 | Metagenome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209394_1030973 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 969 | Open in IMG/M |
| Ga0209394_1041642 | All Organisms → cellular organisms → Archaea | 702 | Open in IMG/M |
| Ga0209394_1044113 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 657 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209394_1030973 | Ga0209394_10309733 | F064214 | SEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE |
| Ga0209394_1041642 | Ga0209394_10416422 | F091320 | DPHGTLASRLKPNPLLEINFTKGKVDISNNLERIYEEASNWPETNELRLLIVLDETRLLKAKNLVYCVNELGKRGVGFLLITQYSTSIPPEIRNVGTYFIMSAMSETEIQRFKEITLHPSSKLITRLPKAVSYVFSPYWYPEPFFIKNRKVGR |
| Ga0209394_1044113 | Ga0209394_10441131 | F051554 | EGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFYAAMNDAQWNAIVETFTKAGLLETSKSSQSSPNVDGDVGSKAESLQEPEQKPVLKTPQNEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |