NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025076

3300025076: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025076 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0154762 | Ga0209316
Sample NameFreshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size50898861
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1021
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002934Metagenome / Metatranscriptome519Y
F004790Metagenome / Metatranscriptome423Y
F010245Metagenome / Metatranscriptome306Y
F014116Metagenome / Metatranscriptome265Y
F023348Metagenome / Metatranscriptome210N
F030424Metagenome185N
F048958Metagenome / Metatranscriptome147Y
F059951Metagenome / Metatranscriptome133Y
F062551Metagenome / Metatranscriptome130Y
F090615Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209316_102217Not Available3323Open in IMG/M
Ga0209316_102971Not Available2484Open in IMG/M
Ga0209316_105643All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1289Open in IMG/M
Ga0209316_109703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102790Open in IMG/M
Ga0209316_111521Not Available685Open in IMG/M
Ga0209316_112594All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium638Open in IMG/M
Ga0209316_115445Not Available546Open in IMG/M
Ga0209316_115924All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.535Open in IMG/M
Ga0209316_116949Not Available512Open in IMG/M
Ga0209316_117143All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209316_102217Ga0209316_1022177F090615AAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS
Ga0209316_102971Ga0209316_1029711F090615VRAAPVPAPAASGTLTRNEKLAQIRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESAVEHQASWDPDKVYVERTDADIHEEMVTAIKIANGERLRAARAKASAGS
Ga0209316_105643Ga0209316_1056434F002934MKHPAIISIGAFLAVWGTTSNFSLDYRAILGSIVAGVFGYATPKK
Ga0209316_105643Ga0209316_1056435F059951MSTQDYAALAVAIVTVLGGVTAMLNFMIKHYLAELKPNSGSSMKDAVNRLETRVDKIYEILCDKSQ
Ga0209316_105643Ga0209316_1056436F048958MARKKVIDLDTYTALDAWAISLQEMYRALRRAGFEVDLALAVIVEPSAYPDWIIPKPDLIPHTYE
Ga0209316_109703Ga0209316_1097032F004790VAWARKVGLSPDRVAFLLACPKYTVSKGHRKSDKVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLETARKRRDEMLAAFDSGQPIPHLNRK
Ga0209316_111521Ga0209316_1115212F090615RAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAARAKASAGS
Ga0209316_112594Ga0209316_1125941F023348MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILTVAY
Ga0209316_115445Ga0209316_1154451F010245YAATHNGQSYIGLTRKGTVTVTKAVKERWRKHISRAKHEDRAWVLYQYIKGGAWDGWTHEVLDIVRGRAEAYAYERELVKAIQPELNDQYL
Ga0209316_115924Ga0209316_1159241F014116VADNSADIAKRIILGCVAEGMTIEQACASAGKSIKTYEYYRRTDKVFCDKVDRTRLG
Ga0209316_116949Ga0209316_1169491F030424MIDSIQFAELELRVNDLTNALARVIEERDNYKDTADSLFRELESCRVALVQASSDISRLRVYLAQGAEL
Ga0209316_117143Ga0209316_1171432F062551MKKIITFLLLTAAFAATAWDQRAPLPPQACAVHSPWGWAQTARPAQPICREAYFVAYDAPVKIPVYVSYTLLPQNALGCWPRTNAF
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