| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025063 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0127782 | Ga0209493 |
| Sample Name | Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_matched (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 130607346 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 3 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Nevada, Gerlach, Sandy's Spring West | |||||||
| Coordinates | Lat. (o) | 40.653 | Long. (o) | -119.3749 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F074155 | Metagenome | 120 | Y |
| F089858 | Metagenome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209493_1009191 | All Organisms → cellular organisms → Archaea | 2461 | Open in IMG/M |
| Ga0209493_1019088 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1283 | Open in IMG/M |
| Ga0209493_1021981 | All Organisms → cellular organisms → Archaea | 1122 | Open in IMG/M |
| Ga0209493_1022043 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1119 | Open in IMG/M |
| Ga0209493_1034465 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 732 | Open in IMG/M |
| Ga0209493_1048841 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209493_1009191 | Ga0209493_10091915 | F089858 | EYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND |
| Ga0209493_1019088 | Ga0209493_10190882 | F089858 | MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSKKGFDGLLNIPVKRGELWVEELDDGRFTINLDDPDDPKITCVEVQVVREDLEEETIKAKDVKYVILGDIPDMGRARFVRIREGVREVEEE |
| Ga0209493_1021981 | Ga0209493_10219813 | F089858 | VDGFYAEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELEDGRFAINLDGPDDPKITCVEVQAVHEDLEEETIKAKGVKYVIIGDIPDMGRARFVRIREGVREVEEGE |
| Ga0209493_1022043 | Ga0209493_10220433 | F089858 | MEWVEYLVRLRFHVDGFYPEKLTREYVEREVRRKLSVPELEEEGLMEIIISKKGFDGLLNIPVKRGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKTKDVKYVIIGDIPGMGRARFVRIRKGVREIEEEGE |
| Ga0209493_1034465 | Ga0209493_10344651 | F074155 | EGSRFEGHWQPCNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAADLGLRARQVKTLIEWEDPPQLRKVLSRISLLLTQMGQRENWLLANYAGNLARKIVAFKLLTKQPISHKLGDAIIAHTIEKFGLKTAASDLKVETEDLQLIRQLENMAQKPKRPKPAYQASSSINSN |
| Ga0209493_1048841 | Ga0209493_10488411 | F089858 | MEWVEYLVRLRFHVDGFYPERLTKEYVEREVRRKLSVPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCAEVQAVHEDLEEETIKAKGVKHVIIGDIQDMGRARFVRIREGVREVEEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |