| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023664 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0290745 | Ga0247527 |
| Sample Name | Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21741839 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 24 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5 | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007739 | Metagenome / Metatranscriptome | 345 | Y |
| F009688 | Metagenome / Metatranscriptome | 314 | Y |
| F010621 | Metagenome / Metatranscriptome | 301 | Y |
| F016908 | Metagenome / Metatranscriptome | 243 | Y |
| F018933 | Metagenome / Metatranscriptome | 232 | N |
| F019067 | Metagenome / Metatranscriptome | 231 | Y |
| F025750 | Metagenome / Metatranscriptome | 200 | Y |
| F026569 | Metagenome / Metatranscriptome | 197 | Y |
| F028056 | Metagenome / Metatranscriptome | 192 | Y |
| F031504 | Metagenome / Metatranscriptome | 182 | Y |
| F031875 | Metagenome / Metatranscriptome | 181 | N |
| F036126 | Metagenome / Metatranscriptome | 170 | Y |
| F050832 | Metagenome / Metatranscriptome | 144 | Y |
| F061214 | Metagenome / Metatranscriptome | 132 | Y |
| F065397 | Metagenome / Metatranscriptome | 127 | Y |
| F066368 | Metagenome / Metatranscriptome | 126 | Y |
| F068321 | Metagenome / Metatranscriptome | 124 | N |
| F068527 | Metagenome / Metatranscriptome | 124 | N |
| F068861 | Metagenome / Metatranscriptome | 124 | Y |
| F072836 | Metagenome / Metatranscriptome | 121 | Y |
| F086425 | Metagenome / Metatranscriptome | 110 | Y |
| F089697 | Metagenome / Metatranscriptome | 108 | N |
| F097372 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247527_102431 | Not Available | 1573 | Open in IMG/M |
| Ga0247527_106901 | Not Available | 899 | Open in IMG/M |
| Ga0247527_107594 | Not Available | 840 | Open in IMG/M |
| Ga0247527_108221 | Not Available | 796 | Open in IMG/M |
| Ga0247527_108371 | Not Available | 785 | Open in IMG/M |
| Ga0247527_108491 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 776 | Open in IMG/M |
| Ga0247527_108623 | Not Available | 768 | Open in IMG/M |
| Ga0247527_108673 | Not Available | 764 | Open in IMG/M |
| Ga0247527_108742 | Not Available | 760 | Open in IMG/M |
| Ga0247527_111581 | Not Available | 614 | Open in IMG/M |
| Ga0247527_111851 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5 | 602 | Open in IMG/M |
| Ga0247527_112072 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 594 | Open in IMG/M |
| Ga0247527_112462 | Not Available | 581 | Open in IMG/M |
| Ga0247527_112603 | Not Available | 576 | Open in IMG/M |
| Ga0247527_112902 | Not Available | 566 | Open in IMG/M |
| Ga0247527_112950 | Not Available | 564 | Open in IMG/M |
| Ga0247527_113156 | Not Available | 557 | Open in IMG/M |
| Ga0247527_113178 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 556 | Open in IMG/M |
| Ga0247527_113262 | Not Available | 553 | Open in IMG/M |
| Ga0247527_113720 | Not Available | 539 | Open in IMG/M |
| Ga0247527_113951 | Not Available | 532 | Open in IMG/M |
| Ga0247527_114081 | Not Available | 529 | Open in IMG/M |
| Ga0247527_114140 | Not Available | 527 | Open in IMG/M |
| Ga0247527_115221 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247527_102431 | Ga0247527_1024312 | F068861 | LINLSNSLIPQQLFDMPSLTSTRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY |
| Ga0247527_106901 | Ga0247527_1069011 | F018933 | TSRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT |
| Ga0247527_107594 | Ga0247527_1075942 | F031504 | MPRASVIRRWGLTTRGRDYQLTPTFPRLPGIIPEDPASGPPLARQPLRK |
| Ga0247527_108221 | Ga0247527_1082211 | F068527 | LDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAS |
| Ga0247527_108371 | Ga0247527_1083711 | F089697 | GVSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANLRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP |
| Ga0247527_108491 | Ga0247527_1084911 | F010621 | LTWLAGRWRNHQPKRAEKPHSKSIGREALDGPATRPKTPLAVENGVGKPAAPEGRPMPVRERELG |
| Ga0247527_108623 | Ga0247527_1086231 | F009688 | AHPFGAAGFPTPFSTASGVSGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACNSFVRVLTTGSGSATAFGGAFARNHGSRLFTLKLLLFHSPAVSFLISPAFGSFSRGLPGRRVLPDAHTLFVRLSAFLILASSTFYF |
| Ga0247527_108673 | Ga0247527_1086731 | F068861 | MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAVAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY |
| Ga0247527_108742 | Ga0247527_1087421 | F036126 | VNSASPKLALRLMRSRVNQPDPTFPQSPGIIHGTLSFNLTLHCR |
| Ga0247527_111581 | Ga0247527_1115811 | F025750 | MEKADAHRSINPLPAKTGSGERRAHVTPSPDAEFRPCMPVGERADR |
| Ga0247527_111851 | Ga0247527_1118511 | F019067 | LDLNEIYQLGRRTASIAIEQGVPLLGRGTKVLGREVGDDRVDLSRTPDSLCTTLVVQEDVIKMVTSPEDTSVRMKSWNFCEVTSGPLTDPSQGFDHVRKNGDFSDLGFNDSVVLRIILDVQKGEGEEHSSTPPGKMSMLGSRLATPRRENRGMWMIASVFQDSMLCTHKATEPKYLPSVMGGTGVTALFDNSNNVFLYTL |
| Ga0247527_112072 | Ga0247527_1120721 | F061214 | RCRLVNGFAKLTNINLALKETPINDGLTDEGPKVAEYPGR |
| Ga0247527_112462 | Ga0247527_1124621 | F086425 | MVLACYFVHSLAGFSCSFGFPLRRQLLVCPSYRLHPRFKPVSFLPGLLCRLCRLYPLPIGSFRSLWINASTGFATIRSAFRNCPIFVRSPQPFH |
| Ga0247527_112603 | Ga0247527_1126031 | F031875 | MRSSNLTPFGDCDSSVLETCPDYLTQLAAVSNRDSLRDPSFAFDGVRTPPEESVNSASPNLRSVQRSRGNQPAPAFPRSPGIILKRPVPILFSTTVS |
| Ga0247527_112902 | Ga0247527_1129021 | F028056 | PGFTARLSEPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLQPVIHAPLMRSHDATPSPLPFGLFLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTPLRPVWLSF |
| Ga0247527_112950 | Ga0247527_1129501 | F026569 | MHGTEHRVSERRALRLLAPRKPFYPASASKLPDAPQPLCLSKTGPFARNGLSLVRNDLRLRGSHYGVDDPGLLLRSLAYRFSCPFGFLTPPPAAGLPQLPAASTPQTRCTLYRPALPAVPPASAPLQEFSLPRDQSLGWCRNRSVHLPESPDLRSLPVAFPLKDSATDHRSRSATFPEACCS |
| Ga0247527_113156 | Ga0247527_1131561 | F072836 | VALARDTLPHRGPASLDLHAPACARRVPLAWTGQIEGRSVRVKASRALLDDVARALLVALRAPGSPVRLAMRSGGPRRSSRRPRLLFDASPRRATPSKEPGCLLPHRNPYASGGWLLRARLDRGLVTPPPERHCSETRAPLLPALQRLLLTRKALEPARPTVSRGAEASLERPVAAPVTASTTES |
| Ga0247527_113178 | Ga0247527_1131781 | F065397 | VQVRVFVSRLFSPDNLTLVMAITKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEGDNERFSSAQC |
| Ga0247527_113262 | Ga0247527_1132621 | F016908 | EKYSFDLRENGLRPVLSFLDVTNLSENDPLLPHIFEGPWSGIEEFFQGNAFITYKFLKAHALLLEFGRLFVVIDKARNCAKQGGTLLVYGVANAQLNSLLDSTKSMVNAIRDEFASVCKIAECAFEKLVYDNKATPQRSKWIGHFKFVFPASNAINDAVRQLLEDVGLIKLHANSMTLYERFQK |
| Ga0247527_113720 | Ga0247527_1137201 | F097372 | HFNVGLVPNTRTPSRMVCLLQYSTVGMSNESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECVDTLESLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLITALPGNRSQINLDIGKLLSERAKLDKLIKQFDTATIV |
| Ga0247527_113951 | Ga0247527_1139511 | F050832 | MVMEAAAADRTSLAKKKKDGPSRAMLRSILLSILHV |
| Ga0247527_114081 | Ga0247527_1140811 | F068321 | LYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLRIRSLFLFRRSLS |
| Ga0247527_114140 | Ga0247527_1141401 | F066368 | CATSLRTRPRHACDFLSRLNHLAPGQPPFLTARSPDATGLASSLRDCFFSQSSDAIFSTASLRKFFHAACQAFVAFPLHAPALFAFQRFSFGELTFYFEFRRATHTVLIRSSNQSLFWQLRFVQTRNLPELLHSTRSGFSSPLAADPSFAFGARERARGTGEFCLRHPAFRLV |
| Ga0247527_115221 | Ga0247527_1152211 | F007739 | KNKIDAVCFRIIPGDWGKAGSGWLTWLLSNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |