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Sample 3300023485
3300023485: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_143C
Overview
| Basic Information |
| IMG/M Taxon OID | 3300023485 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0133482 | Gp0296384 | Ga0257032 |
| Sample Name | Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_143C |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of California, Irvine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 88984957 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| Not Available | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Child Gut Microbiome |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information |
| Location | USA: Northridge, California |
| Coordinates | Lat. (o) | 34.2381 | Long. (o) | -118.5301 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F047125 | Metagenome / Metatranscriptome | 150 | N |
| F052660 | Metagenome | 142 | N |
| F074964 | Metagenome | 119 | N |
| F090484 | Metagenome | 108 | N |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0257032_12900 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 7038 | Open in IMG/M |
| Ga0257032_15075 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3536 | Open in IMG/M |
| Ga0257032_15708 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3130 | Open in IMG/M |
| Ga0257032_17342 | Not Available | 2418 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0257032_12900 | Ga0257032_1290010 | F074964 | MITKKNVNKLQNSVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ |
| Ga0257032_15075 | Ga0257032_150752 | F047125 | MDVVLLLMVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS |
| Ga0257032_15708 | Ga0257032_157082 | F052660 | MCILRVLPEKTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS |
| Ga0257032_17342 | Ga0257032_173421 | F090484 | MNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSRSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSEWSKEKVATVKASMTDAEACCAEVGTSVAGVCGRVSRRMKSYNNTATDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL |
