Sample 3300023368

Overview

Basic Information
IMG/M Taxon OID	3300023368 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133538 \| Gp0295823 \| Ga0256753
Sample Name	Hydrothermal Fe-rich mat microbial community from Snakepit Site, Mid-Atlantic Ridge, Atlantic Ocean - 667-BS4
Sequencing Status	Permanent Draft
Sequencing Center	University of Delaware
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	275647014
Sequencing Scaffolds	9
Novel Protein Genes	12
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrothermal Fe-Rich Mat Reference Genomes
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline)

Location Information
Location	International: Snakepit Site, Mid-Atlantic Ridge
Coordinates	Lat. (^o)	23.369112	Long. (^o)	-44.950984	Alt. (m)	N/A	Depth (m)	3504.92
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014327	Metagenome / Metatranscriptome	264	Y
F024166	Metagenome / Metatranscriptome	207	Y
F030933	Metagenome / Metatranscriptome	184	Y
F048578	Metagenome	148	Y
F049761	Metagenome	146	Y
F059476	Metagenome / Metatranscriptome	134	Y
F064726	Metagenome / Metatranscriptome	128	Y
F066904	Metagenome / Metatranscriptome	126	Y
F078607	Metagenome	116	N
F082711	Metagenome / Metatranscriptome	113	N
F088919	Metagenome	109	Y

Family

Category

Number of Sequences

3D Structure?

F014327

Metagenome / Metatranscriptome

264

F024166

Metagenome / Metatranscriptome

207

F030933

Metagenome / Metatranscriptome

184

F048578

Metagenome

148

F049761

Metagenome

146

F059476

Metagenome / Metatranscriptome

134

F064726

Metagenome / Metatranscriptome

128

F066904

Metagenome / Metatranscriptome

126

F078607

Metagenome

116

F082711

Metagenome / Metatranscriptome

113

F088919

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256753_1006372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3747	Open in IMG/M
Ga0256753_1007842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3370	Open in IMG/M
Ga0256753_1056833	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1179	Open in IMG/M
Ga0256753_1088145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	949	Open in IMG/M
Ga0256753_1107576	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	864	Open in IMG/M
Ga0256753_1135739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	775	Open in IMG/M
Ga0256753_1171311	Not Available	698	Open in IMG/M
Ga0256753_1174206	Not Available	693	Open in IMG/M
Ga0256753_1215571	Not Available	632	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256753_1006372

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256

3747

Open in IMG/M

Ga0256753_1007842

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

3370

Open in IMG/M

Ga0256753_1056833

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

1179

Open in IMG/M

Ga0256753_1088145

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

949

Open in IMG/M

Ga0256753_1107576

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

864

Open in IMG/M

Ga0256753_1135739

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium

775

Open in IMG/M

Ga0256753_1171311

Not Available

698

Open in IMG/M

Ga0256753_1174206

Not Available

693

Open in IMG/M

Ga0256753_1215571

Not Available

632

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256753_1006372	Ga0256753_10063721	F024166	VRSRFDDHWARGFEVCDAIDEADGLHYRLRRRSDGSILPVLFADDDVREEKRRAMWWI
Ga0256753_1007842	Ga0256753_10078422	F030933	MRDNLPTREQQRKQAQAVKTAWVLGFIALAVFATFIGAAAMRY
Ga0256753_1056833	Ga0256753_10568332	F064726	MGDVMLATQEVASQESGNERKYRSPNRILVRSFRISRDKWKLKYMDTRADLKRERQRGTERGDSRDRWRAECEAAKEQARAAEAVAQERLVELEQLRASEAEVKKTLLANAS
Ga0256753_1088145	Ga0256753_10881452	F064726	EGAMVATTEVAPEATNQRKFRSPNRILARSFRLARDKWKQKYMTTRADLKRSRQLATERGDSRNRWRAECDTAKEQALAAEMLAQERLIELEQLRASEADVKKTLLANAS
Ga0256753_1107576	Ga0256753_11075762	F014327	VTPNDVAIHDPMDSTASSKGDYKPASFIKGLPAMAQPLWVQEQMGDNVKDEARFMTDTFIKWMRSPSDDIFWKTASSDEIKAMQEDTDAEGGFFVPEQFLANTIHDTGVPGSQLRPLCTVIRVASKDGYIPTMASATWAAIAEEAAPTEST
Ga0256753_1128822	Ga0256753_11288221	F088919	MYVEEICLSAAVADLDEDQPPDEQIIATLEQASRLRRCQSEFTLLSNHRLSVKSQGFMQKTRDYTVDIGILDPQPRRVLNICWGNLLNFVVLCGAIWAFALTDLASNTVLLPLILGVCAGLSLILAVYRSHDRLVFYSQYGRVPLVVLFNRSSDRAELGSFTDTLVHHIKDAKVHHPDMNETLSEELKAHRRLMEAGAISSKRYDLVKQRILSQHS
Ga0256753_1134172	Ga0256753_11341722	F078607	MASPVSVLSTTLQLLRSQLIDNSFLAHPLIRAIEDHGNIV
Ga0256753_1135739	Ga0256753_11357392	F082711	MRTTEFKIKLDGRTFRGQLPCSVSKKRPELGPLIDSEDLEVFEGKVARRIFAEKLRGSQSFRLCRSYCEMSMQAVADLLQVDRRTVQRWESEESPVPPWAMLLVSKMADERSKGRAVMRSWLVAL
Ga0256753_1171311	Ga0256753_11713111	F066904	MRVRSRVNRVAVHDVPKQEVLVHIQRLGHRVELAQPQARFDFVIDDRACLALRVAYPSSSRRRVKMGKRTYEYVYRAWNFNFHHRGEVGECYCDLFICVPLLREHRTDLAEAFLLPWDAIGGKTFYLPDSRRPYAGKFAVYRNAWHLLRDAPARASDI
Ga0256753_1174206	Ga0256753_11742061	F059476	MAEQGNKRQSTRMVITVVLLVLLALGFFAASFFALP
Ga0256753_1215571	Ga0256753_12155711	F049761	MTTAIESQYHFTAEVKNKGKQQNRDGWAMVVDWKLPGSQYDLTLYGQDWETVGDVVIDEKGQGPLCIFTIQQGNLKKNKDGTIKDGKYSTDYFWDLVGIESTWI
Ga0256753_1215571	Ga0256753_12155712	F048578	LEQEAYRRIEERGATSIPSETYICEMETGFKYDQPSFGPLKEIFNEVDLKKCLTPAHTEEVKVEDKWTTATVKSLATKYGAEAMRIFENARMETRGRLKFARRETR

Scaffold ID

Protein ID

Family

Sequence

Ga0256753_1006372

Ga0256753_10063721

F024166

VRSRFDDHWARGFEVCDAIDEADGLHYRLRRRSDGSILPVLFADDDVREEKRRAMWWI

Ga0256753_1007842

Ga0256753_10078422

F030933

MRDNLPTREQQRKQAQAVKTAWVLGFIALAVFATFIGAAAMRY

Ga0256753_1056833

Ga0256753_10568332

F064726

MGDVMLATQEVASQESGNERKYRSPNRILVRSFRISRDKWKLKYMDTRADLKRERQRGTERGDSRDRWRAECEAAKEQARAAEAVAQERLVELEQLRASEAEVKKTLLANAS

Ga0256753_1088145

Ga0256753_10881452

F064726

EGAMVATTEVAPEATNQRKFRSPNRILARSFRLARDKWKQKYMTTRADLKRSRQLATERGDSRNRWRAECDTAKEQALAAEMLAQERLIELEQLRASEADVKKTLLANAS

Ga0256753_1107576

Ga0256753_11075762

F014327

VTPNDVAIHDPMDSTASSKGDYKPASFIKGLPAMAQPLWVQEQMGDNVKDEARFMTDTFIKWMRSPSDDIFWKTASSDEIKAMQEDTDAEGGFFVPEQFLANTIHDTGVPGSQLRPLCTVIRVASKDGYIPTMASATWAAIAEEAAPTEST

Ga0256753_1128822

Ga0256753_11288221

F088919

MYVEEICLSAAVADLDEDQPPDEQIIATLEQASRLRRCQSEFTLLSNHRLSVKSQGFMQKTRDYTVDIGILDPQPRRVLNICWGNLLNFVVLCGAIWAFALTDLASNTVLLPLILGVCAGLSLILAVYRSHDRLVFYSQYGRVPLVVLFNRSSDRAELGSFTDTLVHHIKDAKVHHPDMNETLSEELKAHRRLMEAGAISSKRYDLVKQRILSQHS

Ga0256753_1134172

Ga0256753_11341722

F078607

MASPVSVLSTTLQLLRSQLIDNSFLAHPLIRAIEDHGNIV

Ga0256753_1135739

Ga0256753_11357392

F082711

MRTTEFKIKLDGRTFRGQLPCSVSKKRPELGPLIDSEDLEVFEGKVARRIFAEKLRGSQSFRLCRSYCEMSMQAVADLLQVDRRTVQRWESEESPVPPWAMLLVSKMADERSKGRAVMRSWLVAL

Ga0256753_1171311

Ga0256753_11713111

F066904

MRVRSRVNRVAVHDVPKQEVLVHIQRLGHRVELAQPQARFDFVIDDRACLALRVAYPSSSRRRVKMGKRTYEYVYRAWNFNFHHRGEVGECYCDLFICVPLLREHRTDLAEAFLLPWDAIGGKTFYLPDSRRPYAGKFAVYRNAWHLLRDAPARASDI

Ga0256753_1174206

Ga0256753_11742061

F059476

MAEQGNKRQSTRMVITVVLLVLLALGFFAASFFALP

Ga0256753_1215571

Ga0256753_12155711

F049761

MTTAIESQYHFTAEVKNKGKQQNRDGWAMVVDWKLPGSQYDLTLYGQDWETVGDVVIDEKGQGPLCIFTIQQGNLKKNKDGTIKDGKYSTDYFWDLVGIESTWI

Ga0256753_1215571

Ga0256753_12155712

F048578

LEQEAYRRIEERGATSIPSETYICEMETGFKYDQPSFGPLKEIFNEVDLKKCLTPAHTEEVKVEDKWTTATVKSLATKYGAEAMRIFENARMETRGRLKFARRETR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023368: Hydrothermal Fe-rich mat microbial community from Snakepit Site, Mid-Atlantic Ridge, Atlantic Ocean - 667-BS4

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences