NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023310

3300023310: Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 674-BM1-C3



Overview

Basic Information
IMG/M Taxon OID3300023310 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133538 | Gp0295814 | Ga0256722
Sample NameHydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 674-BM1-C3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delaware
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97362260
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Fe-Rich Mat Reference Genomes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationUSA: Loihi Seamount, Hawaii
CoordinatesLat. (o)18.901418Long. (o)-155.258191Alt. (m)N/ADepth (m)1179.43
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003617Metagenome / Metatranscriptome477Y
F008189Metagenome / Metatranscriptome337Y
F020998Metagenome / Metatranscriptome221Y
F022976Metagenome212Y
F027204Metagenome195N
F029285Metagenome / Metatranscriptome189Y
F031891Metagenome / Metatranscriptome181N
F033078Metagenome178Y
F050671Metagenome / Metatranscriptome145N
F088125Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256722_109330All Organisms → Viruses → Predicted Viral2158Open in IMG/M
Ga0256722_114415Not Available1574Open in IMG/M
Ga0256722_115001Not Available1528Open in IMG/M
Ga0256722_127191Not Available1021Open in IMG/M
Ga0256722_131248Not Available933Open in IMG/M
Ga0256722_133002Not Available901Open in IMG/M
Ga0256722_133012Not Available900Open in IMG/M
Ga0256722_135318Not Available861Open in IMG/M
Ga0256722_145202Not Available734Open in IMG/M
Ga0256722_145592All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium731Open in IMG/M
Ga0256722_146473Not Available722Open in IMG/M
Ga0256722_149873Not Available690Open in IMG/M
Ga0256722_152191Not Available670Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256722_109330Ga0256722_1093305F088125MYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFMEHAIAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFMLISGVAFMIHMIKEQTPHHPFYIRENNEDD
Ga0256722_114415Ga0256722_1144153F088125MMYLLDAGRVALFSIFLVATLRFFYLSWQTRNTHSDDIVVQQHFMEHVVAAAFSFMGSLIGTLYSIVHLFSTEQGELSELPFTVAIVFLLVSGVAFMLHMIKEQTPHHPFYIRENHEDD
Ga0256722_115001Ga0256722_1150013F088125MMYVLDAGRVSLFSIFLVATLRFFYLSWQTRNTHSDDVVVQQHFMEHIVAAAFAFMGSLIGTLYSIVHLFSTDQGELSELPFTVSLVFLLVSGGAFMVHMIKEQTPHHPFYIRENHEDD
Ga0256722_127191Ga0256722_1271913F029285RRGSYTGAIDMKDSADYNLYKCPYEHLKKECGHELHGPEGYENTYGVCCSCGFRAPVFYLDPEDLRLEKKALIDGVEI
Ga0256722_131248Ga0256722_1312483F088125DAGRVALFSIFLVATLRFFYLSWQTRNTHSDDVVVQQHFMEHIVAAAFAFMGSLIGTLYSIVHLFSTDQGELSELPFTVALIFLLVSGGAFMVHMIKEQTPHHPFYIRENHEDD
Ga0256722_133002Ga0256722_1330021F020998GSNTPTASRAGRAGGYLMQTNARTSTRPGYIFDDHAALMLALFDLLDQAAVDYDRSEDVVDDFQAYLKDWARRRDEKPER
Ga0256722_133012Ga0256722_1330122F008189MDYKEELKRLQEGSNYWKPKVGQYKLKALSELEEADPFVKQREGQEDEVHPQMKIKVTIDGEEKLWTFGKGKTPASTYGQLVELASKHANQLTNVEFSVVVKSDGTKNDYTIVN
Ga0256722_135318Ga0256722_1353182F088125MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFMEHAVAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFILISGVAFMIHMIKEQTPHHPFYIRENNEDD
Ga0256722_145202Ga0256722_1452022F088125MMYLLDAGRVVLFAAFLVATLQFFYLSWQTRNAHSDDVVVQQHFLEHAIAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFMLISGVAFMIHMIKEQTPHHPFY
Ga0256722_145592Ga0256722_1455921F003617YPRVFSDTDAGLLLNEGSDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVNKGNPIDIQVNLVTVVTGTNTRQEGYAPVAPLLKTAVMKRFYESGMSLHLHPDLSHADGVFKYSQQRVSLLG
Ga0256722_145592Ga0256722_1455922F031891LASEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKEQGSMHTDSQIDDLINNA
Ga0256722_146473Ga0256722_1464731F050671LPFWDFLTRKQEPGDVAVAVPLNYDVGQATYPDASFESFATEGYAKSEIVHACIRELAVSAASPRYYVQAPATGGGAVEITSGLLHDLTSKPNPTSDWYSFV
Ga0256722_146473Ga0256722_1464732F022976VKPLTVKTKDWTAGRRWAKRNAIATPGVTYTLLQDGRLLSYRYENGLMYCTGPTKRMKPYHPRWLTASEPMC
Ga0256722_149873Ga0256722_1498731F027204MRNDHKSWKTGVRVAKQFGGALAGRLGAAARPIARTLGYKKGERVYKKGGNAK
Ga0256722_152191Ga0256722_1521911F033078MNKWKEIKALPNHLQPKILSAVAYVNECAPNMSKSVERINTLMKHLSDKEMMFV
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